| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4306 |
|---|
| Symbol | xerC |
|---|
| ID | 1171911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 4483618 |
|---|
| End bp | 4484517 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637346032 |
|---|
| Product | integrase/recombinase XerC |
|---|
| Protein accession | NP_719831 |
|---|
| Protein GI | 24375788 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4973] Site-specific recombinase XerC |
|---|
| TIGRFAM ID | [TIGR02224] tyrosine recombinase XerC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGCGC GTTGTCACTC CTATTTACAA CAATTTGAAG CCTATATGCA GTCGGAGCGA
CAGTTATCGG CGCATACTGT GCGCAACTAC CTGTACGAGT TGCAGCGTGG TCGCGAATTA
TTGCCCGAAG GGATTGATTT ACTCAATGTC GGGCGTGAGC ACTGGCAACA AGTGCTCGCC
AAGTTGCACC GTAAGGGGTT GAGCCCACGA TCGCTGTCAT TATGGTTATC GGCGGTAAAA
CAATGGGGAG AGTTTTTATT GCGCGCAGGT GCGATAGAAC TCAATCCCGC CAAGGGGCTC
AGTGCGCCCA AGCAAGCTAA GCCTTTGCCT AAAAATATCG ATGTCGATTC TCTCACGCAT
TTGCTGGAAA TTGACGGCAA TGATCCGCTA ACGCTGCGCG ACAAAGCGAT TATGGAGCTG
TTTTATTCCA GCGGGTTACG TTTAGCAGAG CTCGCTGCGC TCGATTTATC CAGTGTGCAA
TACGATCAGC GTGAGGTGCG GGTGTTAGGC AAGGGTAACA AAGAGCGTAT TGTCCCCGTG
GGGCGTTACG CGATTGATGC CATTAGCGCT TGGCTTGAGT GTCGCAGGCA AATCCCCTGT
GAAGATAACG CATTATTTGT CACCGAAAAG GGCAAGCGTT TGTCCCATCG CAGTATTCAA
GCGCGCATGA GTAAATGGGG CCAAGAGCAG GCGTTATCGA TGCGGGTTCA TCCCCATAAG
TTACGTCATT CTTTCGCCAC GCATATGCTG GAATCCAGTG CTGATTTACG TGCAGTACAA
GAATTATTAG GCCATGAAAA CCTGTCTACC ACGCAAATTT ATACCAGTTT AGATTTCCAA
CACTTGGCGA AGGTGTATGA TAACGCCCAT CCTAGGGCGA AAAAACAACA GGATAAATAA
|
|---|
| Protein sequence | MPARCHSYLQ QFEAYMQSER QLSAHTVRNY LYELQRGREL LPEGIDLLNV GREHWQQVLA
KLHRKGLSPR SLSLWLSAVK QWGEFLLRAG AIELNPAKGL SAPKQAKPLP KNIDVDSLTH
LLEIDGNDPL TLRDKAIMEL FYSSGLRLAE LAALDLSSVQ YDQREVRVLG KGNKERIVPV
GRYAIDAISA WLECRRQIPC EDNALFVTEK GKRLSHRSIQ ARMSKWGQEQ ALSMRVHPHK
LRHSFATHML ESSADLRAVQ ELLGHENLST TQIYTSLDFQ HLAKVYDNAH PRAKKQQDK
|
|---|
| |