| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4267 |
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| Symbol | hsdR |
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| ID | 1171870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 4444274 |
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| End bp | 4447840 |
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| Gene Length | 3567 bp |
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| Protein Length | 1188 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637345992 |
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| Product | type I restriction enzyme EcoKI subunit R |
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| Protein accession | NP_719794 |
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| Protein GI | 24375751 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG4096] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCATTAG ACACACAAGG CCAGAGTACT GAAAAGGACT CTGCTAACTT TAGTTTTCTC
AAACCATACG ACCCTATTTT TATCGATTTG GCCTGCAGTG CTGAACGTGC GTTTACCAGC
GATCCCAACA CTACCTTAAT TAAGCTGCGC CAGTTAGGTG AAGCGATGGC GCAAGATATT
GCGGCTCGGT GCGGCATAGA GTTTGATGAC AAAACGACTC AAGCAGATTT ACTCTTCAAA
ATTAATCGTG AGTTAACCTT AGAGCCTGTG GTCCGCCAGT TATTTCATGC CTTAAGGATT
GAAGGCAATA AAGCCACTCA CCAATTTCGA ACCCAACATA AAGAAGCATT AGAAGGCTTA
AAGCTTGCTC GTAGCCTAGC GATTTGGTTC CATCATACCT TTGGCGATCA AAAGACCGCA
TTTAAAGCCG GCCCGTTTGT CCCACCTGAA GATCCCAGTA AGCAACTGCA AGAGTTACAA
ACTCAAATTG AATTATTGCG TAGTGAACTT AACGATAACC ACCAGCAATT AGCCGATAAT
CAGCAATTAA CAACATTACT GGCCCGTGAA AAAGAAGAGT ACGCGGTATT AGCTGAGCAA
ATGGATGCAG AGGCGCGAGC GTTGTCAAAG TTGGCCGCGC AGCATGAGCA AGCTCTCGTA
GCGCAAAAGC ATCAATTCGA ATTACGCATT AAAGCGCTAC AAGCAGAATT AGTACAGCTT
GCTCAAGTCG ATAACCAAGC GGCGACCAAA AATAAGAAAC AACTCAGTCA GCAAGCGAGC
AAAGCGGGTA ATCACATTGA GTTAAACGAA GAGTTAACGC GGGTGTTGAT TGATCAACAA
CTGATAGAAG CTGGCTGGAT TGCCGATTCC CAAAGATTAG ATTTTCGTAA AGGCACTCGG
CCAGAAAAAG GTAAAAACCT TGCAATAGCC GAGTGGATAA CATGGCATAA AGGTAAAAAA
GGTCGAGCCG ACTATGTGTT GTTTTGCGGC TTAATCCCCG TTGCTGTGGT AGAAGCAAAA
AAAGAAAACA CCCACGTTGC CGGTAAAATA TCCCAAGCCG AGCGTTACTC CAAAGGCTAT
AAACTGATAG CGCCTCAACA AGGTGCATGG GAAATTGAAG GCCGCACAGT AGCATGGGCC
GATGACGCAG ACGGCCATTA CCATATCCCT TTTGTTTATT CCTGTAATGG CCGCGAGTTT
AATAAGCAAC TGGCAGAGTT ATCAGGCACT TGGTTTCGCG ATACCCGTAA ACCCAGTAAC
ACCAAGCGGG CGCTGCAACA GTTTCACTCG CCTGATGGCC TGCTTGATAA ATTAAAGCGC
AGCCGCGAAG CCGCCGAGCA AACACTTCAA CAAGAAGGCT TTGATTACCT CGGTCTGCGC
GATTACCAGC AAAAAGCTAT CGCAGCTGTA GAGTCGGCTT TAGCGCAAGA TAACACTCAG
TGTCTGCTGG CAATGGCCAC AGGTACAGGC AAAACCCGCA CTATTATTGG TTTGATGTAT
CGATTTTTAA AGGCCGAGCG TTTTAGGCGT ATCTTGTTCC TCGTTGATAG AACCGCATTG
GGTGAGCAAG CGTGCGACTC CTTTGACGAA GCCAAGCTTG AGCAAAACAA AGTGCTGTCG
TCTATCTACA ATATTGCCGA GCTTGGCGAT ATGAAAAGTG AAGCTGAAAC TCGCATTCAA
GTCGCGACAG TACAGGCCAT GGTCAAACGG ATTTTTATGT CGGATAACCC GCCCCCGCTG
GACGAGTTTG ACTGCATTAT TGTCGATGAA GCGCACAGAG GTTATGCCCT AGATCAGCAA
ATGACCGAAG GTGAACTTGC CACTCGCGAT GCCAGCCAAT ATCTGTCCAG TTATCGGCGG
GTACTCGATT ACTTTGATGC GGTGCGTATC GGCTTAACCG CAACGCCTGC CAAGCATACA
AGTGAGATTT TCGGTAAACC GGTTTACACC TACAGCTATC GCGAAGCGGT TGCCGGCGAT
TGGCTTATCG ACCATGAGCC ACCGATCCGC TATGAAACCC TGTTAAACAA ACACGGCATT
AAGTTTGAAA AAGGCGAAAC CGTCACCTCC ATCAACACCC AAACCGGTGA AATTGAAACG
GCCGATTTAG AAGACGAATT AAAGTTCGAT GTTGAATCCT TTAATAAAAG AGTGATTACT
GAGTCGTTTA ATGAAGTCAT CTGCCAAGAA TTAATCAAAG AGTTAGACCC TTTTGGCGAT
GAGAAAACCA TGATTTTTTG TGCAACCGAT GTGCATGCAG ACATGGTAAA ACGCTTATTA
GATAAAGCCT TTCTTGATAT GTATGGCGAT GACTACAATC AAGCGGCAGT GGCTAAAATT
ACCGGTCAAA GTGATAAAGT CAGCCAGTTG ATACGCCAAT ATAAAAACGA GCGTTATCCT
AATATCGCCA TTACTGTTGA CCTATTATCA ACCGGTATCG ATGTGCCTAA GATTTGTCAT
TTAGTGTTTT TACGTCGAGT CAAATCACGC ATTCTGTACG AACAAATGAT GGGCCGTGCC
ACTCGCCGCT GTGACGACAT AGGTAAAACG GCTTTTAAGA TTTATGATCC GGTTGATATT
TACAGCGCGC TTGAAGCTGT TAACACTATG AAGCCGATAG TGAAAGATCC CAACATTACC
CTTGAGCAGC TGGTGGACGA GTTAACTGAC GATACCTTTT TAGAACGCGC ACTTAATACC
CCTGGTGAAC AAGTCGGTGC AGGTGCAGAT AGTCACACCA ATAGCCATGC CCACGACGTG
CTTAATCAAC TTGGGCAGAA AGTGATGCGG GTGATGCGAA AAGCGACTAA AAAAGCCGAG
AATAAGCCAG AGCTTAAAGC CAAGCTCGAG CAACTTGAAG AGTTATGGGG CGTAGCACCA
GCGAAACTCC ACCAGCATCT ACATCAAATT GGCCCCAGAG AGGCGGCACA ATTTTTTAAG
CAGCACCAAA GTTTGATTAA TCAGTTAGCC GAAGTCCGTT ATCTGGTGGG TAGCGACAGT
ATGCCGCTCA TCTATGAAGG GCGTGATGAG TTCATAGAGC GTCAGCAAAA TTATGGTATA
CACGAAAAGC CCGCTGATTA TCTTGAAAGC TTCAGTCACT TCATTAAGCA AAACATTAAC
CAATCAGCAG CCTTGTCCGT TGTGGTAAAT CGACCTAAAG ATCTCACCCG AGCTCAGCTA
AAAGAGGTCA AATTACTGCT TGATGAGGCA GGCTATAGCG AAGCCCACCT GCAAAGTGCG
TGGCGTAAAA ACACCAACCA AGATATCGCC GCGAGTATTA TCGGTTATAT TCGCCAAGCC
GCATTGGATG AAGCCTTAAT CCCCTTTGCC CAGCGGGTGA ATAACGCCAT GCAACGCATT
TACAGCGAAC ATGATTGGAA CCCAAATCAG CGTAAGTGGC TAGACCGTCT AGCAAAACAA
TTGGTGCATG AGGCTGTGAT TGATAAAGCC TTTGTGAATA ATCGTTTTGC TAGTGACGGT
GGTGCCAAAC GCTTTAACAG TGTACTCAAT GACCAACTCG ATACCATTTT AGACGAGCTC
AATGCCTACC TGTGGCAAGT GGGTTAG
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| Protein sequence | MALDTQGQST EKDSANFSFL KPYDPIFIDL ACSAERAFTS DPNTTLIKLR QLGEAMAQDI
AARCGIEFDD KTTQADLLFK INRELTLEPV VRQLFHALRI EGNKATHQFR TQHKEALEGL
KLARSLAIWF HHTFGDQKTA FKAGPFVPPE DPSKQLQELQ TQIELLRSEL NDNHQQLADN
QQLTTLLARE KEEYAVLAEQ MDAEARALSK LAAQHEQALV AQKHQFELRI KALQAELVQL
AQVDNQAATK NKKQLSQQAS KAGNHIELNE ELTRVLIDQQ LIEAGWIADS QRLDFRKGTR
PEKGKNLAIA EWITWHKGKK GRADYVLFCG LIPVAVVEAK KENTHVAGKI SQAERYSKGY
KLIAPQQGAW EIEGRTVAWA DDADGHYHIP FVYSCNGREF NKQLAELSGT WFRDTRKPSN
TKRALQQFHS PDGLLDKLKR SREAAEQTLQ QEGFDYLGLR DYQQKAIAAV ESALAQDNTQ
CLLAMATGTG KTRTIIGLMY RFLKAERFRR ILFLVDRTAL GEQACDSFDE AKLEQNKVLS
SIYNIAELGD MKSEAETRIQ VATVQAMVKR IFMSDNPPPL DEFDCIIVDE AHRGYALDQQ
MTEGELATRD ASQYLSSYRR VLDYFDAVRI GLTATPAKHT SEIFGKPVYT YSYREAVAGD
WLIDHEPPIR YETLLNKHGI KFEKGETVTS INTQTGEIET ADLEDELKFD VESFNKRVIT
ESFNEVICQE LIKELDPFGD EKTMIFCATD VHADMVKRLL DKAFLDMYGD DYNQAAVAKI
TGQSDKVSQL IRQYKNERYP NIAITVDLLS TGIDVPKICH LVFLRRVKSR ILYEQMMGRA
TRRCDDIGKT AFKIYDPVDI YSALEAVNTM KPIVKDPNIT LEQLVDELTD DTFLERALNT
PGEQVGAGAD SHTNSHAHDV LNQLGQKVMR VMRKATKKAE NKPELKAKLE QLEELWGVAP
AKLHQHLHQI GPREAAQFFK QHQSLINQLA EVRYLVGSDS MPLIYEGRDE FIERQQNYGI
HEKPADYLES FSHFIKQNIN QSAALSVVVN RPKDLTRAQL KEVKLLLDEA GYSEAHLQSA
WRKNTNQDIA ASIIGYIRQA ALDEALIPFA QRVNNAMQRI YSEHDWNPNQ RKWLDRLAKQ
LVHEAVIDKA FVNNRFASDG GAKRFNSVLN DQLDTILDEL NAYLWQVG
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