Gene SO_4241 details

Gene Information

• Locus tag: SO_4241
• Symbol: recQ
• ID: 1171845
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 4418789
• End bp: 4420612
• Gene Length: 1824 bp
• Protein Length: 607 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637345967
• Product: ATP-dependent DNA helicase RecQ
• Protein accession: NP_719768
• Protein GI: 24375725
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0514] Superfamily II DNA helicase
• TIGRFAM ID: [TIGR00614] ATP-dependent DNA helicase, RecQ family; [TIGR01389] ATP-dependent DNA helicase RecQ

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAACTC AGTTACTCAA CACGCATGAT GATCCGCTTT CAGAGCGCCT CGCGCAGGTG 
TTTGGCTACC GTGACTTTAG GGACGGTCAG CGCGAAGTCA TCGAGCGGGT ATGTCGTGGT 
GAGGATTGCC TAGTGATCAT GCCTACCGGT GGCGGTAAGA GCCTGTGTTA CCAGTTGCCA 
GCGCTGATGA TGCATGGCAT CACTATCGTG GTTTCGCCAC TGATTTCATT GATGAAAGAT 
CAGGTTGATA GTCTATTGCA GACAGGTGTG AATGCCGCCT ATTTAAACTC CTCACAGCCA 
AGAGAGCTGA GTTTAGAAGT GCTTCGGCAG TTGCATCTCG GCGAGCTAAA ATTGCTTTAT 
GTGTCCCCCG AGCGCTTACT CACGGCAGAT TTTATTGAGC GAATGCAGTC TCTGCCGCTG 
TCTATGTTTG CTATTGATGA GGCGCACTGT ATCAGCCAGT GGGGGCATGA TTTTCGGCCC 
GAATATGCCG CGCTCGGCCA GTTAAAACAA CTGTTTCCCC ATGTGCCAAT GATGGCGCTG 
ACAGCCACTG CAGATCAGGC AACGCGGCAG AATATTTGTG AACGTTTAGG CATCAATCCC 
TTCAAGTTAT TATCAAGTTT CGATCGGCCT AATATCCGTT ATACAGTGGC TGAAAAACTC 
AATGCAGCTA ATCAATTACG GCAGTTTTTG CTGCAACAAA ATGGCAGTAG CGGCATTATT 
TACTGCAGCA GTCGCCGCCG GGTTGATGAA GTCGCTGAGA GGCTCACGCT ACAGGGGTTT 
CATGCTAAGG CTTACCATGC GGGAATGACG CCAGAAGAAC GTGGCGAAGT GCAAGATAGC 
TTTCTTAAAG ATCAAATAGA TATCGTGGTT GCGACCGTCG CCTTTGGCAT GGGGATCAAT 
AAATCGAACG TGCGCTTTGT GGTGCATTAC GATATCCCTA AGAGTATCGA GGCCTATTAC 
CAAGAAACTG GCCGCGCAGG ACGTGATGGA CTCGAGGCGG AAGCCTTTAT GTTGTTCGAT 
CCTGCCGATA TTGGTCGAGT GCGCCATCTG ATAGAACAGT CTGAACCTGG GCCGCAGCAA 
CAAGTTGAAT TCCATAAACT CAATACCATG GCCGCTTTTG CCGAGGCGCA AACCTGTCGG 
CGCCAAGTGC TGCTGCATTA TTTTGATGAA AGTGCGTTAG AGCCCTGCGG TAACTGCGAT 
ATTTGCCTTG ATCCACCTAA GCGCTATAAC GGTAGCGAGG ATGCGCAAAA GGTACTTTCT 
TGTATTTATC GACTCGGACA ACGCTTTGGC ATTAATCATT TAATCGAAGT ATTGCGAGGC 
TCAAAGGGCG CTGCAATTGT TGACCGCGGC CACGATAAGC TCAGCACTTG GGGAATTGGT 
AAAGATAAGA GCCATGAATA TTGGCTGAGC GTTATTCGCC AACTGATCCA TTTGGGCCTG 
GCAAGTCAAG ATATTACTCG AGGCTCATCT ATCACCTTAA ACCCCTCCGC AAGGCCAATT 
TTAAAAGGCG AGGTCGCGCT GATGTTGGCG GAGCCGCGTA TTCAACTTAC CAGCATAAAG 
CGTAAAACGA CCCAATCGAG AGTGCCGCTT AACTATGATC GCAAGTTATT CGCACGCCTT 
AAAACACTGC GCCGTGAGAT TGCCGAAGAG CAAGACGTAC CGCCTTATCT GGTATTTAAC 
GATGCGACCT TAGCGGAAAT GGCTGCCATG ATGCCGACAA GCCCTGGAGA AATGCTTGCC 
GTTAACGGCG TGGGAGAGCG TAAACTCAGT CGATTTGGCG GCGAGTTTCT CGATGAAATC 
GCGGCTTATT TAGCGGGTGA GTAG 

 

Protein sequence

METQLLNTHD DPLSERLAQV FGYRDFRDGQ REVIERVCRG EDCLVIMPTG GGKSLCYQLP 
ALMMHGITIV VSPLISLMKD QVDSLLQTGV NAAYLNSSQP RELSLEVLRQ LHLGELKLLY 
VSPERLLTAD FIERMQSLPL SMFAIDEAHC ISQWGHDFRP EYAALGQLKQ LFPHVPMMAL 
TATADQATRQ NICERLGINP FKLLSSFDRP NIRYTVAEKL NAANQLRQFL LQQNGSSGII 
YCSSRRRVDE VAERLTLQGF HAKAYHAGMT PEERGEVQDS FLKDQIDIVV ATVAFGMGIN 
KSNVRFVVHY DIPKSIEAYY QETGRAGRDG LEAEAFMLFD PADIGRVRHL IEQSEPGPQQ 
QVEFHKLNTM AAFAEAQTCR RQVLLHYFDE SALEPCGNCD ICLDPPKRYN GSEDAQKVLS 
CIYRLGQRFG INHLIEVLRG SKGAAIVDRG HDKLSTWGIG KDKSHEYWLS VIRQLIHLGL 
ASQDITRGSS ITLNPSARPI LKGEVALMLA EPRIQLTSIK RKTTQSRVPL NYDRKLFARL 
KTLRREIAEE QDVPPYLVFN DATLAEMAAM MPTSPGEMLA VNGVGERKLS RFGGEFLDEI 
AAYLAGE