| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4170 |
|---|
| Symbol | |
|---|
| ID | 1171776 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 4343403 |
|---|
| End bp | 4344113 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637345895 |
|---|
| Product | C factor cell-cell signaling protein |
|---|
| Protein accession | NP_719699 |
|---|
| Protein GI | 24375656 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATATTC TAGTACTGGG CGGCAGCGGT GGTATAGGTC AAGCGATGGT CAATAAGCTT
GGCGAAACCT ATCCCGAGGC CACAATTCAT GCGACCTATA AACATCATAG GCCAGATACT
GGGCGAGACG ATTGCGTTAT CTGGCATCAG TTGGATATCA CCCTTGAGGA GGAAATTAAG
CAACTGAGTC AAAACATTCC CCAATTAGAT TGGCTAATCA ATTGTATTGG CATGCTGCAC
ACCGAGGATA AGGGACCAGA AAAAAGCTTA CAGACCCTCG ATGGGGATTT TTTCCTAGAT
AATATCAAGC TAAATACCCT TCCCAGCATG CTGCTGGCAA AACACTTCAG CCATGCCTTA
AAACAAAGTA ACTCAGCAAG ATTTGCGGTG ATTTCGGCGA GAGTCGGCAG CATTAGCGAT
AACAGATTAG GTGGTTGGTA CAGCTATCGC GCCTCCAAAG CGGCGCTGAA TATGTTCCTC
AAAACGTTAT CGATTGAATG GCAAAGAAGC ATCAAACACT GCGTGGTGCT GTCACTGCAT
CCCGGCACCA CGGATACACC ATTATCCAAA CCTTTTCAGC AGAGTGTGCC CAAAGATAAA
TTGTTTACAC CAGAGTATGT TGCCCAGTGT TTAGTGGGTA TTATTGCCAA TGCCACCCCA
ACTCAAACAG GAACATTTTT GGCCTACGAT GGGGTAGAAC TGCCTTGGTA G
|
|---|
| Protein sequence | MHILVLGGSG GIGQAMVNKL GETYPEATIH ATYKHHRPDT GRDDCVIWHQ LDITLEEEIK
QLSQNIPQLD WLINCIGMLH TEDKGPEKSL QTLDGDFFLD NIKLNTLPSM LLAKHFSHAL
KQSNSARFAV ISARVGSISD NRLGGWYSYR ASKAALNMFL KTLSIEWQRS IKHCVVLSLH
PGTTDTPLSK PFQQSVPKDK LFTPEYVAQC LVGIIANATP TQTGTFLAYD GVELPW
|
|---|
| |