Gene SO_4128 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_4128 
Symbol 
ID1171739 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp4286103 
End bp4287038 
Gene Length936 bp 
Protein Length311 aa 
Translation table11 
GC content46% 
IMG OID637345858 
ProductSPFH domain-containing protein/band 7 family protein 
Protein accessionNP_719657 
Protein GI24375614 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATAATT TACCACTGAA TACCGATGTC GCAGTTATGG CTATTTGGGG GCTGATTTTT 
GCCATCTTCG TCATTAAGTT GTTTCAATCG ATTCGTTTAG TGCCGACAAA ATCGGCCTAT 
ATTGTTGAGC GTTTAGGTAA ATATCACTCA ACCTTGGATG CGGGGTTCCA TACACTGATC 
CCCTTTGTTG ATAAAGTGGC TTATATCCAT GATTTAAAGG AAGAAACTAT CGATGTTCCG 
CCACAGGAGT GCTTCTCAAG TGACGAAGTG AATGTAGAGG TTGACGGGGT AATTTATATC 
TCTGTTACCG ATCCTGTTAA GGCCAGCTAT GGTATTACTG ACTATCGTTA TGCGGCGATT 
CAGCTGGCGC AAACGACAAC GCGCTCTGTG ATCGGTACAT TAGATTTAGA CCGGACTTTC 
GAAGAAAGAG ATGTGATTTC AGCTAAAGTG GTTGAGGTGC TCGATCAAGC GGGTGCCATG 
TGGGGGATCC GCGTGCATCG TTATGAGATT AAAAACATCA CACCGCCAGA GACAGTAAAA 
AATGCCATGG AAATGCAAGT GAATGCTGAG CGTGAGCGCC GCGCATTACT GGCAAAAAGC 
GAGGGTGATA AGCAGAGTAA GATCAATCGT TCCGAAGGGA TTAAAGCCGA AACTATCAAC 
CGTTCTGAGG GTGAAATGCA GCGCCGTATT AACGAGGCTG AAGGTAAAGC GGAAGAAATT 
TTAACGTTGT CGCGCGCAAC GGCGGAGTCT ATTGAGCGTT TAGCTAGCGT GATTGCCGCG 
CCCGGCGGCC ATAATGCATT GCGTATGCAG CTTGGTGAGC AATACTTTAA ACAACTTGAT 
GGGTTAAGCC AAAAGTCTAG CCGTATTGTG TTGCCCGGTA ATATGGTTGA TTTCGACTAC 
TGGATGAATA GCATCGGCTT AAAAGAAGAA CGCTGA
 
Protein sequence
MDNLPLNTDV AVMAIWGLIF AIFVIKLFQS IRLVPTKSAY IVERLGKYHS TLDAGFHTLI 
PFVDKVAYIH DLKEETIDVP PQECFSSDEV NVEVDGVIYI SVTDPVKASY GITDYRYAAI 
QLAQTTTRSV IGTLDLDRTF EERDVISAKV VEVLDQAGAM WGIRVHRYEI KNITPPETVK 
NAMEMQVNAE RERRALLAKS EGDKQSKINR SEGIKAETIN RSEGEMQRRI NEAEGKAEEI 
LTLSRATAES IERLASVIAA PGGHNALRMQ LGEQYFKQLD GLSQKSSRIV LPGNMVDFDY 
WMNSIGLKEE R