Gene SO_4116 details

Gene Information

• Locus tag: SO_4116
• Symbol: mshH
• ID: 1171731
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 4275178
• End bp: 4277073
• Gene Length: 1896 bp
• Protein Length: 631 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637345850
• Product: regulatory protein CsrD
• Protein accession: NP_719645
• Protein GI: 24375602
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTAACAA CAAAATTAAC CAGCTTTTGG TTGATGTCTT TGGCCGCTAT CGCCTTTGTA 
TTTTTACTTT GCGCCATGAT GAGCTTTGTG CAGTTGACCT ATAAGTTTCA GCAGCAGAAA 
GTGGCAGAGC TTGAAACCTT GCTGATAGAG CATTACCACA CTCAGCCAGA TTGGGAGTTA 
GAATCCTGGC TGCCTCCCAT GTTGCTTGCC TTTAACGCCG TCGAATTTCG TTTAACCATG 
AAGAGCGAAG TGCTATTTGC CTATCAAGGC AATGTGCAAA CTCAAAATCC CATGGTGTAT 
ACCCATTTGC TTGATCCTCA GTCGGGCCTC AGTATGACAT TGAGTTTGCC GCAACCTTTC 
GACCATTACA GTATCAGTTG GTATGAGCTG CTCATTTTGG GCGTTGGCTT GCTGGCGGTT 
ATCGCGCTGG TGCGTTTCGG GCATATATGG TTATCACAAC AGTTGGATGG GATTGAGGAG 
CTTGCACAGC GTAGTCGATT GATTTTACAG GGTAAACATG AGCAAGCCCT CGCTACGCCC 
GGTAATGGCA AACCAAGGTT AATCAATCGA GCGCTGACCA AGCTGCTTGA GGAATTGCAG 
GATGCTCACA AAGAACGCGG TCGTTTCGAT AAATTTATTC GTTCCAATAC TTTTTTAGAT 
GCACAAACCC GTATTGGTAA TCGGTTGTTT TTAAATAACC GTCTTGATGC CTTGAGTCAC 
GACCAAGGCA TGGTCGCTCA TGGGGTGATT TATCTGCTAG AAATGGATGA CCTCGATTTT 
ATACAACAGG CAAAAGGGGA GGGCGCTGTT AAAGATCTAC TCCATGCGAC GGTCAATGGC 
ATTAACTCCA TTTTGCAAAG TTTACCCAAT AGCATATTTG CGCGACGTAC CCACAATCAA 
TTTGCGATTG TAGTGCCCCA TGTCTCCCTG ATTGAAGCCG ACCAGCTCGC GAGCAAATTG 
CTGAAAGTCT GCTTGAGCCA ACCTTTGCCC GATGGCGTTG ACAATCGGGA TAACTTTTAC 
CATTTAGGCT GCGCTTACTT TACGGCGGGG GATAATGTTA ATCAGCTGCT CGATGAAGCC 
GATATGGCGT TACGTGCAGC CCAATTACAA GGTAACAGTA ATTGGTTTAT GTATGATAAA 
GGTGCGATTG ATGAAGAGTT TGCAAAGGGT TCGGTGCGTT GGCGCAGCTT CTTAGAGAAT 
GCTTTAGTTC AGCGGCGTTT TTATCCCTTC AGTCAGCCGA TTATGGATTC CGACGGGGTT 
GAGCACCATA AAGAGATCTT TACTCGGGCG AGGGATAATC AAGGAGCATT AGTGCGGGCG 
ACGTTGTTTA TCCCTATGGC TAATAAATGT GGTTTGATGC CGCAAATTGA GCGGCAAATG 
ATTGAGCGTG TGTTGGTTTT GCTTGGGCAA GAACAGCATA AAGGCCAAGT CTACAGTGTG 
AATCTTAGCC TAGATACTTT GATGAGCCGC GCTTTTACGC ATTGGCTTAA AACCACCTTG 
CTTGAATATC GCCATTTGAC GCCTCAACTG ATTTTTGAGG TATCTGAGGA CATAGTGGTC 
CAGCATCAAG ATAAACTGCA GCCTAAACTC GATATGATCA GTAAGATGGG GGCTCGCCTC 
TGTGTTGACC ATGTAGGGCA ACAGGTTGTT GGCACTTACT ATATCCGAGA GTGTCATTTC 
GACATGATTA AATTGCACCG TTCTATCGTG CGACATATTC ATTTGCGCCC TGAAAATCAA 
TTATTTATTC GCAGTTTAAT CGGTGGTTTA TATCGTACTG AAGTGCTAGT GAGTGCTGAA 
GGCGTTGAAG TATTTGAAGA ATGGCAAACC CTGCAAATCC TTGGGGTGGG GATGGCTCAG 
GGCATGTATT TTAGCGATCC CGTAGAGTTG CAATAG 

 

Protein sequence

MLTTKLTSFW LMSLAAIAFV FLLCAMMSFV QLTYKFQQQK VAELETLLIE HYHTQPDWEL 
ESWLPPMLLA FNAVEFRLTM KSEVLFAYQG NVQTQNPMVY THLLDPQSGL SMTLSLPQPF 
DHYSISWYEL LILGVGLLAV IALVRFGHIW LSQQLDGIEE LAQRSRLILQ GKHEQALATP 
GNGKPRLINR ALTKLLEELQ DAHKERGRFD KFIRSNTFLD AQTRIGNRLF LNNRLDALSH 
DQGMVAHGVI YLLEMDDLDF IQQAKGEGAV KDLLHATVNG INSILQSLPN SIFARRTHNQ 
FAIVVPHVSL IEADQLASKL LKVCLSQPLP DGVDNRDNFY HLGCAYFTAG DNVNQLLDEA 
DMALRAAQLQ GNSNWFMYDK GAIDEEFAKG SVRWRSFLEN ALVQRRFYPF SQPIMDSDGV 
EHHKEIFTRA RDNQGALVRA TLFIPMANKC GLMPQIERQM IERVLVLLGQ EQHKGQVYSV 
NLSLDTLMSR AFTHWLKTTL LEYRHLTPQL IFEVSEDIVV QHQDKLQPKL DMISKMGARL 
CVDHVGQQVV GTYYIRECHF DMIKLHRSIV RHIHLRPENQ LFIRSLIGGL YRTEVLVSAE 
GVEVFEEWQT LQILGVGMAQ GMYFSDPVEL Q