Gene SO_4105 details

Gene Information

• Locus tag: SO_4105
• Symbol: mshA
• ID: 1171718
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 4263793
• End bp: 4264308
• Gene Length: 516 bp
• Protein Length: 171 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 637345838
• Product: MSHA pilin protein MshA
• Protein accession: NP_719635
• Protein GI: 24375592
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2165] Type II secretory pathway, pseudopilin PulG
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAGAC AACAAGGTTT TACCTTAATC GAATTAGTCG TAGTGATCAT TATCTTAGGT 
ATTCTTGCTG TCACAGCAGC ACCTAAGTTT ATTAATCTGC AAGGCGATGC GCGTGCGTCT 
GCATTACAAG GTCTAAAAGG TGCAATTCAA GGTGCAAATA GTTTAGTGTT TTCTAAAGCT 
GCATTAGCTG GTAAAGAAAA GGGATCACAA CCAACCTTTT CATTGGGAGA CACTGGAACA 
ATCGCAATTC TTGATGGTTA TATGCTAGCA ACAAAAGCTT CATTAGAAGC TGGTATGGAT 
ATTACTTTTG ACGCTAAAGC TGATCCTCAG CCTGTTACTG CAGATTGGAT TATAGATCCA 
ACAGCTGGTA CACCAGGTAC TGCTAAGATT TATCAACATG GCGCACCTGC AAATTGTTTT 
TTAACTTATA CAGAAGCAAA AGCTGCTAAT ACTTCAACAA ATCCAGCCAC CCCAGGTGAA 
CTGCCTAAGT ATGTTATTAC AGATAGTGGT TGTTAA 

 

Protein sequence

MKRQQGFTLI ELVVVIIILG ILAVTAAPKF INLQGDARAS ALQGLKGAIQ GANSLVFSKA 
ALAGKEKGSQ PTFSLGDTGT IAILDGYMLA TKASLEAGMD ITFDAKADPQ PVTADWIIDP 
TAGTPGTAKI YQHGAPANCF LTYTEAKAAN TSTNPATPGE LPKYVITDSG C