Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_4090 |
Symbol | |
ID | 1171704 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 4244212 |
End bp | 4245633 |
Gene Length | 1422 bp |
Protein Length | 473 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637345824 |
Product | outer membrane efflux protein |
Protein accession | NP_719620 |
Protein GI | 24375577 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACTAT CACGTATGGC ATGGCTGGGT TTATGGTGTT TGCCCTCGCT CGCCCCGTTA GCGACCTATG CCCAGCCCAG TAGTTTTACT GAGGCTTGGC AGCAAGTCCT TAAGGTGAGC GATAAACTTC AGGCCCAATC CCAAGAGGTG AATCGCGCCA AGGGAGAGCA AGAGGCGGGC GAAAGTTTAA ATCTGCCGTC CCTCAGTCTG AATGGCAGTT ATACCCACCT TGAAAAACCG ATTGAATTAG ATTTAAGGGA TCTCAATCCC TTAGCTTCAC TTGATCCTGC GACCTTGCCA CCCGCCCTCG GCGGCGCCTT GGCGAGTATT CCGGGATCAT TATTTGTTAC GCCTTTTACC GAGCAAGATA TTTTCCGCGC CAGCTTACAG GCGATGTGGC CTATCTATAC TGGTGGGCAG ATCACCGCAG CCCAAGGCAT TCATGCCGCC ATGGTGGCCG AGAAACAACA GGAATTACAG TTAGCTAGCC GCGACTTATT CACTCAGTTG GTTGATAGGT ACTATGCCGT TGATGTGACT CAGTCTTTAG TTAATACCCA AACTGAGCTG GTGGCCTCCT TAACTAAGCA CGTTGACCAT GCGCTAGCCC TTGAACGTGA AGGACAAATT GCTAAAGTCG AGCGCCTCAA TGCCCAAGTC GCCTTAGATA ATGCTAAGGT CAATTTAGGT AGCGCCCGCC GTCAACATGA AATGGCCGTT ATCGCCCTAT CACGTATGTT ACAGCAGAGT GATGTCAGTA CTAACTCGCC GCTATTTGTG CTGCCACAGG CGCCGTCATT GGGGGACTTG ACCCAAATGA CCTTAAATCA ACATCCGGCG CTTAAACTGC TTGAGGCTAA AGAGGCGCAA GCCAATGGTT TGGTTTCCTT GGAGAAAGGT AAATATCATC CCACGGTTTT TCTCTTTGGT AATTACACCC TATACGAAGA TGACAGCTTG TTTTCTAAGG TCGAGCCGGA CTGGATGGTC GGCGTTGGAG TAAAAGTGCC CTTGCTGAGC CGCGATGGCC GCAGTGGTAA AGTCGAAGCG GCTAAGAGCG CTTTGCTGCA AGCCCGTTAC ACTAAGGCGC AAACACGCCA AGACTTAAGT TTGCTGCTCG ATCAAAGTTA TCGCCAGCTG TTGCAGGCCG AGGAAGAGGT CAACTCACTC AATACCTCAC TTGAATTGGC GAGTGAAAAC TTACGCCTAA GGGAAATCGC CTTTAATCAA GGGCTTTCAA CCTCTATTGA CAGAGTGGAT GCCGAATTAA AACTGAGCGC AGTTAAAACT CAGCAACTCG GTGCCCGTTA TCGTTATGTG CAAGCCTATG CCAGATTAAT GGCCATCAGT GGTCAATTAG ATGAATTTAT CGGTCGCAGT GCCACAGGCA TTCAATCGCA GGAGACTATC AATGCGCGCT AA
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Protein sequence | MKLSRMAWLG LWCLPSLAPL ATYAQPSSFT EAWQQVLKVS DKLQAQSQEV NRAKGEQEAG ESLNLPSLSL NGSYTHLEKP IELDLRDLNP LASLDPATLP PALGGALASI PGSLFVTPFT EQDIFRASLQ AMWPIYTGGQ ITAAQGIHAA MVAEKQQELQ LASRDLFTQL VDRYYAVDVT QSLVNTQTEL VASLTKHVDH ALALEREGQI AKVERLNAQV ALDNAKVNLG SARRQHEMAV IALSRMLQQS DVSTNSPLFV LPQAPSLGDL TQMTLNQHPA LKLLEAKEAQ ANGLVSLEKG KYHPTVFLFG NYTLYEDDSL FSKVEPDWMV GVGVKVPLLS RDGRSGKVEA AKSALLQARY TKAQTRQDLS LLLDQSYRQL LQAEEEVNSL NTSLELASEN LRLREIAFNQ GLSTSIDRVD AELKLSAVKT QQLGARYRYV QAYARLMAIS GQLDEFIGRS ATGIQSQETI NAR
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