Gene SO_4089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_4089 
Symbol 
ID1171703 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp4243248 
End bp4244222 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content53% 
IMG OID637345823 
ProductHlyD family secretion protein 
Protein accessionNP_719619 
Protein GI24375576 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCGCTA ACAGAATTCT TGCTCTAACG GCGTTGGTCG CATTAGGCCT TATTTTAGCC 
TATGGGCTCA AATTGGCTTA TAGCCCAAAG CCGAGTGTGC TGCAGGGGCA GATTGAAGCC
CGCGAATATA ACGTTTCCTC TAAGGTGCCT GGGCGGGTCG AGCAAGTGCT TGTGCGCCGT
GGCGATAGTG TCAACGAAGG TGATTTACTG TTTGCTATCC ACAGCCCAGA GCTAGATGCC
AAGCTCATGC AGGCCGAAGG TGGCCGTGAT GCCGCCAAAG CCTTGCAACA AGAGGCAAAT
AATGGTGCCC GCAGCCAAGA AGTGATGGCA GCTAAGGAGC AATGGCTCAA GGCGCAAGCG
GCAGCAACGC TGGCAAAAAC CACTTATACC CGAGTCGAAA ACTTATTTGC TGAAGGAGTC
GCTGCGCGGC AAAAACGCGA TGAAGCTTTT ACCCAGTGGC AAGCGGCTAA GTACACAGAA
CAAGCGGCGT TAGCCATGTA TCAAATGGCT GAAGAAGGCG CGCGGGTAGA AACCAAAGCC
GCTGCGGCGG GGAATGCGCG TATGGCTGAA GGCGCGGTGA AAGAAGTCAG TGCCATTATG
GCCGATAGCC AAATGCGTGC GCCTAAATCT GGGGAAATTA GCGAAGTATT ATTGCAAGCA
GGTGAACTGG CGCCGAGCGG CTTCCCTGTG GTGAGTCTGA TTGATATGCA GGACGCTTGG
GCGGTATTCC AAGTACGTGA AGACCAGCTA AAGCGTTTTA AAAAGGGCGA TAAACTGCAA
TTAACCCTGC CAGCGCTAGA TAAAACGCTA GAGTTTACTG TATCCCATAT CAGTGTGATG
GGTGACTTTG CGACTTGGCG TTCAACCGAA AGTGGCCATG ATTTTGATAT GCGCACCTTT
GAGGTGGAAC TGCGCCCAAC GGCGCCCATT GCGGATCTGC GCGTCGGTAT GTCCGTGTTG
CTCAATGGTG AGTAA
 
Protein sequence
MRANRILALT ALVALGLILA YGLKLAYSPK PSVLQGQIEA REYNVSSKVP GRVEQVLVRR 
GDSVNEGDLL FAIHSPELDA KLMQAEGGRD AAKALQQEAN NGARSQEVMA AKEQWLKAQA
AATLAKTTYT RVENLFAEGV AARQKRDEAF TQWQAAKYTE QAALAMYQMA EEGARVETKA
AAAGNARMAE GAVKEVSAIM ADSQMRAPKS GEISEVLLQA GELAPSGFPV VSLIDMQDAW
AVFQVREDQL KRFKKGDKLQ LTLPALDKTL EFTVSHISVM GDFATWRSTE SGHDFDMRTF
EVELRPTAPI ADLRVGMSVL LNGE