Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_4089 |
Symbol | |
ID | 1171703 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 4243248 |
End bp | 4244222 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 637345823 |
Product | HlyD family secretion protein |
Protein accession | NP_719619 |
Protein GI | 24375576 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCGCTA ACAGAATTCT TGCTCTAACG GCGTTGGTCG CATTAGGCCT TATTTTAGCC TATGGGCTCA AATTGGCTTA TAGCCCAAAG CCGAGTGTGC TGCAGGGGCA GATTGAAGCC CGCGAATATA ACGTTTCCTC TAAGGTGCCT GGGCGGGTCG AGCAAGTGCT TGTGCGCCGT GGCGATAGTG TCAACGAAGG TGATTTACTG TTTGCTATCC ACAGCCCAGA GCTAGATGCC AAGCTCATGC AGGCCGAAGG TGGCCGTGAT GCCGCCAAAG CCTTGCAACA AGAGGCAAAT AATGGTGCCC GCAGCCAAGA AGTGATGGCA GCTAAGGAGC AATGGCTCAA GGCGCAAGCG GCAGCAACGC TGGCAAAAAC CACTTATACC CGAGTCGAAA ACTTATTTGC TGAAGGAGTC GCTGCGCGGC AAAAACGCGA TGAAGCTTTT ACCCAGTGGC AAGCGGCTAA GTACACAGAA CAAGCGGCGT TAGCCATGTA TCAAATGGCT GAAGAAGGCG CGCGGGTAGA AACCAAAGCC GCTGCGGCGG GGAATGCGCG TATGGCTGAA GGCGCGGTGA AAGAAGTCAG TGCCATTATG GCCGATAGCC AAATGCGTGC GCCTAAATCT GGGGAAATTA GCGAAGTATT ATTGCAAGCA GGTGAACTGG CGCCGAGCGG CTTCCCTGTG GTGAGTCTGA TTGATATGCA GGACGCTTGG GCGGTATTCC AAGTACGTGA AGACCAGCTA AAGCGTTTTA AAAAGGGCGA TAAACTGCAA TTAACCCTGC CAGCGCTAGA TAAAACGCTA GAGTTTACTG TATCCCATAT CAGTGTGATG GGTGACTTTG CGACTTGGCG TTCAACCGAA AGTGGCCATG ATTTTGATAT GCGCACCTTT GAGGTGGAAC TGCGCCCAAC GGCGCCCATT GCGGATCTGC GCGTCGGTAT GTCCGTGTTG CTCAATGGTG AGTAA
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Protein sequence | MRANRILALT ALVALGLILA YGLKLAYSPK PSVLQGQIEA REYNVSSKVP GRVEQVLVRR GDSVNEGDLL FAIHSPELDA KLMQAEGGRD AAKALQQEAN NGARSQEVMA AKEQWLKAQA AATLAKTTYT RVENLFAEGV AARQKRDEAF TQWQAAKYTE QAALAMYQMA EEGARVETKA AAAGNARMAE GAVKEVSAIM ADSQMRAPKS GEISEVLLQA GELAPSGFPV VSLIDMQDAW AVFQVREDQL KRFKKGDKLQ LTLPALDKTL EFTVSHISVM GDFATWRSTE SGHDFDMRTF EVELRPTAPI ADLRVGMSVL LNGE
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