Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_4085 |
Symbol | chiA |
ID | 1171700 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 4238538 |
End bp | 4240637 |
Gene Length | 2100 bp |
Protein Length | 699 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637345820 |
Product | chitinase A |
Protein accession | NP_719615 |
Protein GI | 24375572 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3469] Chitinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTAACC CGCAAGCTGG TGTCGTCGTG GGTTACTGGC ATAACTGGTG TGGTGGCGCT GGCTATAAAG GTGGCGTTGC TCCATGTGTT AGCTTGGCGC AGGTGAACCC TCAATATAAT GTTGTCGATA TCTCATTCAT GAAGGTATAT GGCGCAACAG GAAGTATCCC TACTTTTAAA CTCGATCCCG CTGTTGGCTT ATCTGAAGCA CAATTTATTG ACCAAATTGG TGAACTCAAT CGCCAAGGCC GCGCGGTATT AATCGCATTG GGCGGCGCTG ACGCACACAT TGAGCTTCGC AAAGGACAAG AACACGATCT GGCCAATGAA ATTATTCGTC TGGTTGAAAA GTACGGCTTT GATGGACTGG ATATCGATTT AGAGCAAGCT GCCGTAACGG CTGCAGATAA CCAAATCGTC ATTCCCGCGG CGCTACGGAT CGTTAAAGAT CATTACCGTA AACAGCAGAA AAACTTTTTA ATCACCATGG CACCCGAATT CCCTTACCTC ACTACAGGGG GAAAATACGT GCCTTATATC AACGCCCTTG AAGGTTATTA TGATTGGATT AATCCACAGT TTTACAACCA AGGCGGCGAT GGCATTTATA TCGAAGGCAT AGGTTGGATT GCCCAAAACA ACGACAGTTT AAAGCAAGAA TTTATTTACC ATATCTCTGA CGCGCTAGTG AATGGCACAA ACGGCTTCAC TAAAATCCCC CATGACAAGC TAGTTTTTGG TATTCCAACC AATATTGATG CCGCAGCTAC AGGGTATGTC AGCGATCCAA ATGCATTGTT TGCAGCCTTT GAACAATTAA AGAACCAAGG ACAACCGTTA CGCGGCCTTA TGACATGGTC AGTGAACTGG GATATGGGCA AAAATGCCGC TGGGCAGGCC TATAATGAGT CGTTTATTAA GGCATATGGA CCCTTTATCC ACGGCCAAGA TATCACTCCA CCTGAACCTG AAAACGGTAA ACCTATTTTC AGTGGCCTAA GCAATACTCG TGTTAAATTA GGCGGAACCT TCAATGCTAT GGACGGAGTA AGCGCCTATG ATGAAGAAGA TAAAGATCTG ACCCAACAAA TCCAAGTCAC AGGCGACGTT AACACCAACC AGATTGGCCT CTATCCCCTG ACATATAAAG TGACAGATTC CGACAATAAC ACCACTGAAC AAGTGCGTAC GGTTGAAGTG TATAACACTA AACCGGAGCT ATCTGGTGTT AGCAACACCA CAATCATACT TGCAACCCCA TTTGATGCTA TGGCTGGCGT CAGCGCCACA GATGCTGAAG ATGGCAACTT AACCCCAAAT ATCCGTGTTG AAGGCGAAGT GGATAGCAAT CGTGTGGGCC AATATCAACT GACCTATAGC GTTAGCGATA GCGCAGGTGA ACAAACCCGC GCAGTACGCC TTGTAACCGT GCAAGAACAA GGTGCTGTGT GTGAAAATCT ATGGAGCGCT AGCAAAATTT ACCTAGGTGG CGACACAGTA AATTATGCTG GAAAAATTTG GTTAGCGGGA TGGTGGACTC AAGGTGAACA ACCTGATTTG GCAGGCGAGT GGGGTGTTTG GAAGTCTAAG GGCGACAGCG ATTGTGACTC AGGCTTACCT CCGGTTATCA CTCCTAACTT TACAGTGAGT GGCTTAGCCT CAAGCTACAT TCTCAATCAA GGTCAAGTTA GCATTAATTT TAACGTTAAC ACGAACCAAG CAATGGAGTT AACCGCTAAC CTCACTCAAG AGCAACGAAT CCTTGCTAGC ACGACTGCAA CAATAAATGG CAACGGTGCC ATGGTATTAC AAGCGGAATC ATTGGAAGCG GGTGCTTATC AAGTTGTGAT CAGCGCTAAA GATAAGAATC TTACGCAGTC CTATAACGTC TCGCTAGTTC AAGGTGATGA TGGTAGTGAA CCCGTTGAAT ACCCAGCCTA TGTCGCAGGT AATCAATATC AAGCGGGGAA TATTGTTACA AACGCCGGTG GTGTCTACCA ATGCCGACCT TGGCCAAACA GTGGTTGGTG TAGCGGCTCA GCGCCTTACT ATGCGCCAGG TACAGGTAGC GCTTGGCAAG ATGCGTGGAC TAAGCATTAA
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Protein sequence | MVNPQAGVVV GYWHNWCGGA GYKGGVAPCV SLAQVNPQYN VVDISFMKVY GATGSIPTFK LDPAVGLSEA QFIDQIGELN RQGRAVLIAL GGADAHIELR KGQEHDLANE IIRLVEKYGF DGLDIDLEQA AVTAADNQIV IPAALRIVKD HYRKQQKNFL ITMAPEFPYL TTGGKYVPYI NALEGYYDWI NPQFYNQGGD GIYIEGIGWI AQNNDSLKQE FIYHISDALV NGTNGFTKIP HDKLVFGIPT NIDAAATGYV SDPNALFAAF EQLKNQGQPL RGLMTWSVNW DMGKNAAGQA YNESFIKAYG PFIHGQDITP PEPENGKPIF SGLSNTRVKL GGTFNAMDGV SAYDEEDKDL TQQIQVTGDV NTNQIGLYPL TYKVTDSDNN TTEQVRTVEV YNTKPELSGV SNTTIILATP FDAMAGVSAT DAEDGNLTPN IRVEGEVDSN RVGQYQLTYS VSDSAGEQTR AVRLVTVQEQ GAVCENLWSA SKIYLGGDTV NYAGKIWLAG WWTQGEQPDL AGEWGVWKSK GDSDCDSGLP PVITPNFTVS GLASSYILNQ GQVSINFNVN TNQAMELTAN LTQEQRILAS TTATINGNGA MVLQAESLEA GAYQVVISAK DKNLTQSYNV SLVQGDDGSE PVEYPAYVAG NQYQAGNIVT NAGGVYQCRP WPNSGWCSGS APYYAPGTGS AWQDAWTKH
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