| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4078 |
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| Symbol | pmbA |
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| ID | 1171696 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 4231892 |
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| End bp | 4233235 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637345816 |
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| Product | pmba protein |
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| Protein accession | NP_719608 |
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| Protein GI | 24375565 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0312] Predicted Zn-dependent proteases and their inactivated homologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCTTTGA ACAGAATCGA TAGTGAATTG ACCGCGCTGA AAGATGCGGT TGCTGTGGCC
CTCGAATATG CGAATAAATT AGGGACAAAT GCCGCTGAAG TGGCGATCAG TAAACAACAG
GGATTATCGG TTTCAACCCG TTTAAAGGAA GTTGAAACGG TAGAGTTTAA TAAAGATGGC
GCCCTCGGTA TTACGGTTTA TCGCGATGGT TGCAAGGGCA GTTCATCAAC CTCTGATCTC
AGCCCTGAAG CCATTGCGCT GGCGGTAAAA GCGGCCGATG ATATCGCCCG TTACACTTCG
GCAGATCCCT TTAGTGGCCT GGCGGATAAA GCGCTGATGG CGACCGAGAT CCGCGATCTT
AAGCTCTACT ATCCGCAAGA GATTTCAGCC GACGAATTAG CCCAATTGGC CATTCGCGCC
GAAACCGCTG CGCTCGATGC CGATCCGCGC ATCAATAACT CCGACGGAGC GAGCGCCAAT
GCCCATACAT CGGTAAAGGT CTACGGTAAT AGTCATGGCT TTTTAAATGG TTACTGCAGC
TCCCGTTATA GCTTAAGTTG CAGCGTGATT GGTGAAGACC GCAACGGCAA TATGCAGCGG
GATTACGATT ACACTATCGC CCGTAAATTC AATGAGATGC TTTCACCTGA ATCGGTGGGG
CTAAAAACCG CCGAGAAAAC CGTGAGCCGT TTAGGGGCGC GTAAGATCGC CACCACCCGT
TTGCCAATAT TACTGGCGCC AGAGATTGCG ACCGGCTTAA TCGGCCATTT GATTGGTGCC
ATCAGCGGTG GCAGCTTGTA TCGTAAATCG AGCTTCTTAC TCGATGCCAT TCACACCCAA
ATCTTCCCTG ATTGGTTCAG CATTGAAGAG CAGCCGCATC TATTAGGTGC GCTCGCCAGT
GCCAACTACG ATAGTGAAGG GGTTGCGACC CAAGATAGGC GCATTATCGA TCGCGGCATG
TTAGAAACCT ACCTGCTAAC CAGTTATTCG GCGCGCAAAT TGAGCCTACC AAACACTGGA
CATGCGGGCG GGATCTATAA CTGGACCTTA GCGCACACTG GCCAAGGTTT TGATGAATTA
GTCAAAGGCA TGGGCACGGG CTTGATTGTC ACTGAGGTGA TGGGCCAAGG CGTGAATATG
GTGACGGGGG ATTATTCCCG TGGCGCCGCG GGTTTTTACG TCGAAAATGG TGAAGTCCAA
TTCCCCGTGG AAGAAATTAC CATTGCTGGC AATCTTAAGG ATATGTTCCG TGGGATACAG
GCGGTCAGTA AAGACTTCGA TTTACGCTCT TCTATTCGCA CTGGCGGGAT TTTATTATCC
GAGATGAAGG TTGCGGGTAA CTGA
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| Protein sequence | MSLNRIDSEL TALKDAVAVA LEYANKLGTN AAEVAISKQQ GLSVSTRLKE VETVEFNKDG
ALGITVYRDG CKGSSSTSDL SPEAIALAVK AADDIARYTS ADPFSGLADK ALMATEIRDL
KLYYPQEISA DELAQLAIRA ETAALDADPR INNSDGASAN AHTSVKVYGN SHGFLNGYCS
SRYSLSCSVI GEDRNGNMQR DYDYTIARKF NEMLSPESVG LKTAEKTVSR LGARKIATTR
LPILLAPEIA TGLIGHLIGA ISGGSLYRKS SFLLDAIHTQ IFPDWFSIEE QPHLLGALAS
ANYDSEGVAT QDRRIIDRGM LETYLLTSYS ARKLSLPNTG HAGGIYNWTL AHTGQGFDEL
VKGMGTGLIV TEVMGQGVNM VTGDYSRGAA GFYVENGEVQ FPVEEITIAG NLKDMFRGIQ
AVSKDFDLRS SIRTGGILLS EMKVAGN
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