| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4030 |
|---|
| Symbol | uvrA |
|---|
| ID | 1171657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 4185007 |
|---|
| End bp | 4187859 |
|---|
| Gene Length | 2853 bp |
|---|
| Protein Length | 950 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637345777 |
|---|
| Product | excinuclease ABC, A subunit |
|---|
| Protein accession | NP_719560 |
|---|
| Protein GI | 24375517 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0178] Excinuclease ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAGA TTGAAATACG CGGTGCACGA ACCCACAATC TCAAAAATAT CAACCTGACT
ATCCCAAGGG ATAAGTTAAT CGTTATCACA GGATTATCGG GATCAGGCAA ATCTTCCTTA
GCATTTGATA CCTTATATGC CGAAGGCCAA CGACGTTACG TTGAGTCTCT ATCTGCCTAC
GCCCGCCAAT TCTTAAGCTT GATGGAAAAA CCCGATGTCG ATCATATCGA AGGCTTAAGC
CCGGCGATTT CCATCGAACA AAAATCGACG TCACATAACC CGCGCTCAAC CGTGGGCACA
ATCACTGAGA TTTACGACTA TCTACGACTA CTGTTTGCCC GTGTGGGCGA ACCCCGCTGC
CCCACCCACG GCCAACCTTT AGCGGCTCAA ACCGTGAGTC AGATGGTGGA TAAAGTATTA
GAAATGCCCG AGGATAGCCG CTTAATGCTG CTAGCCCCCG TGGTTAACGG TCGTAAGGGT
GAGCACGTTA AATTACTCGA GGGCTTATCG GCGCAGGGTT ATATCCGCGC CCGTATCGAC
GGTGAAGTCT GCGACTTAAC CGATCCGCCA ACCCTAGATT TACACGTTAA ACACACCATC
GAAGTAGTAG TCGATCGCTT TAAAGTTCGC AGCGATATCC AGCAGCGCCT TGCTGAATCC
TTTGAAACCG CACTCGAACT CTCGGGTGGG ATTGCTGTGG TCGCTAGTAT GGATGAAGGG
ACAACGGAAG AATTAATCTT CTCCGCCAAC TTCGCCTGTC CGCACTGCGG CTATTCGATG
GCCGAGCTCG AGCCACGGAT TTTCTCCTTT AACAACCCAG CCGGTGCTTG CCCAACCTGT
GATGGGTTAG GGGTACAACA GTTTTTCGAC CCAGACAGAG TGATCACCAA TCCTGAGTTA
TCCCTGGCTG GCGGCGCGAT TCGCGGCTGG GATAGACGTA ACTTCTATTA CTTCCAGATG
TTAAGTTCGC TCGCCGACCA CTATAAGTTC GATGTCGAAG CCCCCTTCGA ACAGCTATCG
GATAAAGTGA GAAAAATCGT CCTCTACGGT TCAGGTAAAG ACAGCATCGC CTTCAAATAC
ATCAACGACC GTGGCGACGT CGTGGTGCGT AATCATCCCT TTGAAGGCAT TTTAAATAAT
ATGGACAGGC GTTACCGCGA AACCGAAAGT AACGCGGTGC GCGATGAGTT AGCCAAGTTT
ATCAACACCC AAGCTTGCCA AAGCTGTGGC GGCTCGCGTC TGCGTGAAGA AGCCCGCCAC
GTGTTTATAG GCGATCTTAA CCTGCCGAAA CTGACTGTGT GGTCAATTGG CGAAGCCCTA
GATTATTTCG ACAAACTCGA GTTCACTGGC CAAAAAGCCC AAATTGCTGA AAAAATCCTC
AAGGAAGTGC GCGACCGTTT AGGTTTCCTC GTCAATGTTG GCCTCAACTA TTTAAGCCTA
TCGCGCTCAG CCGAAACCCT CTCGGGCGGT GAAGCGCAGC GTATTCGCTT AGCCAGTCAA
ATTGGTGCAG GGCTTGTCGG CGTGATGTAT GTCCTCGATG AGCCATCCAT CGGTTTGCAT
CAAAGGGATA ATGAGCGTCT GCTGCAAACC CTGATCCACC TGCGGGATTT AGGCAACACA
GTGATTGTGG TGGAGCACGA TGAAGATGCG ATTCGCATGG CGGATCATAT TATCGATATC
GGCCCAGGCG CTGGCGTGCA CGGCGGCGAA GTGATTTGTG ATGGTCCCAT TGAGAAAATC
ATCGCCTGTG ACGAGTCCGT CACTGGCCAG TACATTTCGG GTAAACGCAA TATTCATATC
AGTACCCCAC GCACGCCGTT CGATCCCAAA CAGGTAATTG AGCTCTATGG TGCCCGCGGT
AATAACCTGC GTAATGTCGA TTTAACCATT CCAATAGGCT TATTCACCTG CGTGACAGGG
GTATCGGGCT CAGGCAAATC AACCCTGATA AACGACACCT TCTTCAAGAT CGCCCATAAA
ATGTTAAACG GCGCCACCGT TGACGAACCA GCGCCTTACG ATCGGATTGT CGGCATGGAA
CAATGCGATA AAGTGGTCGA TATCGACCAA AGCCCGATTG GCCGGACTCC GCGATCAAAC
CCCGCCACTT ATACTGGCAT CTTTACCCCA ATTCGGGAGA TTTTTGCCGG AACGCAGGAA
TCCCGTACCC GTGGTTATCA GGTCGGGCGC TTTTCCTTTA ACGTTAAGGG TGGCCGCTGC
GAGGCCTGCC AAGGCGATGG TTTAATTAAA GTCGAAATGC ACTTCCTACC CGATGTGTAT
GTGCCCTGCG ATGCCTGTAA GGGCAAACGT TATAACCGCG AAACCTTAGA AGTGCGTTAT
AAAGGCAAGA ATATCCACGA AGTACTGCAA ATGACGGTAG AAGATGCACG CGAATTTTTC
GATGCTGTAC CTGCGATTGC CCGTAAACTG CAAACCCTAA TGGATGTGGG CTTGTCTTAC
GTGCGGTTAG GTCAGAGCGC AACGACGCTG TCAGGCGGTG AGGCCCAAAG GGTAAAACTG
GCCAAGGAAC TATCCAAACG CGATACGGGT AAAACCTTGT ATATCTTGGA TGAACCGACC
ACGGGCTTGC ACTTTGCTGA TATCCAATTG CTACTGGATG TACTGCATCG ACTCAAATCC
CACGGCAACA CGATTGTGGT AATTGAGCAT AATCTGGACG TGATTAAAAC CGCAGATTGG
ATTATCGACT TAGGCCCAGA GGGCGGCGGT GGCGGCGGCA CAATCCTCGC CACAGGTACG
CCAGAAGACG TCGCTCTACA TCCTACCTCA CACACGGCCC GTTTCTTAAA GCCGCTGCTG
GAGCGTGATG CACAGCTAAC CAAACAGCAG TAG
|
|---|
| Protein sequence | MDKIEIRGAR THNLKNINLT IPRDKLIVIT GLSGSGKSSL AFDTLYAEGQ RRYVESLSAY
ARQFLSLMEK PDVDHIEGLS PAISIEQKST SHNPRSTVGT ITEIYDYLRL LFARVGEPRC
PTHGQPLAAQ TVSQMVDKVL EMPEDSRLML LAPVVNGRKG EHVKLLEGLS AQGYIRARID
GEVCDLTDPP TLDLHVKHTI EVVVDRFKVR SDIQQRLAES FETALELSGG IAVVASMDEG
TTEELIFSAN FACPHCGYSM AELEPRIFSF NNPAGACPTC DGLGVQQFFD PDRVITNPEL
SLAGGAIRGW DRRNFYYFQM LSSLADHYKF DVEAPFEQLS DKVRKIVLYG SGKDSIAFKY
INDRGDVVVR NHPFEGILNN MDRRYRETES NAVRDELAKF INTQACQSCG GSRLREEARH
VFIGDLNLPK LTVWSIGEAL DYFDKLEFTG QKAQIAEKIL KEVRDRLGFL VNVGLNYLSL
SRSAETLSGG EAQRIRLASQ IGAGLVGVMY VLDEPSIGLH QRDNERLLQT LIHLRDLGNT
VIVVEHDEDA IRMADHIIDI GPGAGVHGGE VICDGPIEKI IACDESVTGQ YISGKRNIHI
STPRTPFDPK QVIELYGARG NNLRNVDLTI PIGLFTCVTG VSGSGKSTLI NDTFFKIAHK
MLNGATVDEP APYDRIVGME QCDKVVDIDQ SPIGRTPRSN PATYTGIFTP IREIFAGTQE
SRTRGYQVGR FSFNVKGGRC EACQGDGLIK VEMHFLPDVY VPCDACKGKR YNRETLEVRY
KGKNIHEVLQ MTVEDAREFF DAVPAIARKL QTLMDVGLSY VRLGQSATTL SGGEAQRVKL
AKELSKRDTG KTLYILDEPT TGLHFADIQL LLDVLHRLKS HGNTIVVIEH NLDVIKTADW
IIDLGPEGGG GGGTILATGT PEDVALHPTS HTARFLKPLL ERDAQLTKQQ
|
|---|
| |