Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_4017 |
Symbol | |
ID | 1171645 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 4163355 |
End bp | 4164788 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637345765 |
Product | Slt family transglycosylase |
Protein accession | NP_719547 |
Protein GI | 24375504 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1388] FOG: LysM repeat |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGGAAAA CCTTTCGTCA ACCCCATGCA TTAGCTGCGA TGGTTATTGC CATGCTGATG GCCCAGCTAA GTGGCTGCGC AACAACCTCG GCACAGACAT CGCCAACGGA ATTTGGTGCT GGTTTACCAG AAGCCGAAGA TCATAGCGAA TCAGCAGAAC CTCAATCAGT TGAAGCTGAG GTTATCGACG AGCGTTATGC CGATGTGTGG GAGAAAATCC AACACGCCCG CACTATTGAT GTACATGACG ATGCAGAAGT ACGCAAACAA CGTAACTTTT TCGATGATAA ACAAAAATTT ATGACTCAGG TGACACAGCG CGCCGAGCCA TTTTTATATT ATATTGTCAG CCAACTTGAG GCTCGCAATA TGCCGCTTGA ACTGGCACTC CTGCCAATTG TAGAGAGTGG TTACAATCCG CTCGCTCAGG CAAATGGCCC CGCCGGACTT TGGCAAATGA TCCCCGCCAC GGGGCGTAAC TTTGGCCTAA CCATCAACTC AGCCTACGAT GGCCGCAAAG ATGCTCTGGC CTCAACCGAT GCGGTACTCG ACTATCTCCA ACATTTATAC AATACCCTAG GCAATGACTG GATTAACGCC GTAGCGGGTT ACAACAGTGG CGAACTGGTC ATCAAAGCTG CCATTGATAG AAATAAAGCC AAGGGCAAAC CCACGGATTT TTGGTCGCTC AATATTCCGG CTCGCCAAGT GCAAACCGTA CCTAAATGGC TAGCGTTTAT CCAAATTATC CGCGAACCCA GCCATTACAA TCTTAAAGTG ATGCCGATTG CAAACCGTCC CTTTTTAGAA CGCTTACCCG CTCCCAATGG CGTTGAGATA AGCCAAATCG CCAATGCTGC GGGACTCACT AAAGCGGAGT TCAAAACCTA TAACCCAGGA TACCGCCAAA GCGTGATCCC CAGTAAAGGC AAATACCAAA TTGCCCTGCC GATTGAAAAC ATTGGCCACT ATCAAGAAAA CCAGCACAAG CTATATGCAC AAAAACGTTA CGACAGCCAA ACCTATATTG TGAAATCAGG TGATAGCTTA GGCACTATTG CGGCTAAATT TGATTTATCA GTCAAAGAGT TAAAACAGGC GAATAATCTG ACCTCAGATC GCCTTAAAAT CGGCCAAGAG CTTACACTTT TAACCCCAAT GGCGGCCAAT GATAATGAGC CAGAACCAGT AAAGACCAAG GCTAATACCG ATAAATCATC GACCAAAGCG AATGCGAGTA GCACTAAAGC TACCAGCTCA AAATCGACCG ATAAGCCAGT GGCAAAAGCC AAAACCTACA AAGTAAAATC AGGGGATTCA CTAGATAAAA TCGCGCGTAA AAGCAAAGTG AAGCTCGCCG ATTTAATGAA GTGGAACCAG CTAAATGCCA AGAGCATCAT CAAGCCAGGT CAAGAACTCA AAATAAGCGA ATAA
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Protein sequence | MRKTFRQPHA LAAMVIAMLM AQLSGCATTS AQTSPTEFGA GLPEAEDHSE SAEPQSVEAE VIDERYADVW EKIQHARTID VHDDAEVRKQ RNFFDDKQKF MTQVTQRAEP FLYYIVSQLE ARNMPLELAL LPIVESGYNP LAQANGPAGL WQMIPATGRN FGLTINSAYD GRKDALASTD AVLDYLQHLY NTLGNDWINA VAGYNSGELV IKAAIDRNKA KGKPTDFWSL NIPARQVQTV PKWLAFIQII REPSHYNLKV MPIANRPFLE RLPAPNGVEI SQIANAAGLT KAEFKTYNPG YRQSVIPSKG KYQIALPIEN IGHYQENQHK LYAQKRYDSQ TYIVKSGDSL GTIAAKFDLS VKELKQANNL TSDRLKIGQE LTLLTPMAAN DNEPEPVKTK ANTDKSSTKA NASSTKATSS KSTDKPVAKA KTYKVKSGDS LDKIARKSKV KLADLMKWNQ LNAKSIIKPG QELKISE
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