Gene SO_4017 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_4017 
Symbol 
ID1171645 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp4163355 
End bp4164788 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content47% 
IMG OID637345765 
ProductSlt family transglycosylase 
Protein accessionNP_719547 
Protein GI24375504 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1388] FOG: LysM repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGGAAAA CCTTTCGTCA ACCCCATGCA TTAGCTGCGA TGGTTATTGC CATGCTGATG 
GCCCAGCTAA GTGGCTGCGC AACAACCTCG GCACAGACAT CGCCAACGGA ATTTGGTGCT
GGTTTACCAG AAGCCGAAGA TCATAGCGAA TCAGCAGAAC CTCAATCAGT TGAAGCTGAG
GTTATCGACG AGCGTTATGC CGATGTGTGG GAGAAAATCC AACACGCCCG CACTATTGAT
GTACATGACG ATGCAGAAGT ACGCAAACAA CGTAACTTTT TCGATGATAA ACAAAAATTT
ATGACTCAGG TGACACAGCG CGCCGAGCCA TTTTTATATT ATATTGTCAG CCAACTTGAG
GCTCGCAATA TGCCGCTTGA ACTGGCACTC CTGCCAATTG TAGAGAGTGG TTACAATCCG
CTCGCTCAGG CAAATGGCCC CGCCGGACTT TGGCAAATGA TCCCCGCCAC GGGGCGTAAC
TTTGGCCTAA CCATCAACTC AGCCTACGAT GGCCGCAAAG ATGCTCTGGC CTCAACCGAT
GCGGTACTCG ACTATCTCCA ACATTTATAC AATACCCTAG GCAATGACTG GATTAACGCC
GTAGCGGGTT ACAACAGTGG CGAACTGGTC ATCAAAGCTG CCATTGATAG AAATAAAGCC
AAGGGCAAAC CCACGGATTT TTGGTCGCTC AATATTCCGG CTCGCCAAGT GCAAACCGTA
CCTAAATGGC TAGCGTTTAT CCAAATTATC CGCGAACCCA GCCATTACAA TCTTAAAGTG
ATGCCGATTG CAAACCGTCC CTTTTTAGAA CGCTTACCCG CTCCCAATGG CGTTGAGATA
AGCCAAATCG CCAATGCTGC GGGACTCACT AAAGCGGAGT TCAAAACCTA TAACCCAGGA
TACCGCCAAA GCGTGATCCC CAGTAAAGGC AAATACCAAA TTGCCCTGCC GATTGAAAAC
ATTGGCCACT ATCAAGAAAA CCAGCACAAG CTATATGCAC AAAAACGTTA CGACAGCCAA
ACCTATATTG TGAAATCAGG TGATAGCTTA GGCACTATTG CGGCTAAATT TGATTTATCA
GTCAAAGAGT TAAAACAGGC GAATAATCTG ACCTCAGATC GCCTTAAAAT CGGCCAAGAG
CTTACACTTT TAACCCCAAT GGCGGCCAAT GATAATGAGC CAGAACCAGT AAAGACCAAG
GCTAATACCG ATAAATCATC GACCAAAGCG AATGCGAGTA GCACTAAAGC TACCAGCTCA
AAATCGACCG ATAAGCCAGT GGCAAAAGCC AAAACCTACA AAGTAAAATC AGGGGATTCA
CTAGATAAAA TCGCGCGTAA AAGCAAAGTG AAGCTCGCCG ATTTAATGAA GTGGAACCAG
CTAAATGCCA AGAGCATCAT CAAGCCAGGT CAAGAACTCA AAATAAGCGA ATAA
 
Protein sequence
MRKTFRQPHA LAAMVIAMLM AQLSGCATTS AQTSPTEFGA GLPEAEDHSE SAEPQSVEAE 
VIDERYADVW EKIQHARTID VHDDAEVRKQ RNFFDDKQKF MTQVTQRAEP FLYYIVSQLE
ARNMPLELAL LPIVESGYNP LAQANGPAGL WQMIPATGRN FGLTINSAYD GRKDALASTD
AVLDYLQHLY NTLGNDWINA VAGYNSGELV IKAAIDRNKA KGKPTDFWSL NIPARQVQTV
PKWLAFIQII REPSHYNLKV MPIANRPFLE RLPAPNGVEI SQIANAAGLT KAEFKTYNPG
YRQSVIPSKG KYQIALPIEN IGHYQENQHK LYAQKRYDSQ TYIVKSGDSL GTIAAKFDLS
VKELKQANNL TSDRLKIGQE LTLLTPMAAN DNEPEPVKTK ANTDKSSTKA NASSTKATSS
KSTDKPVAKA KTYKVKSGDS LDKIARKSKV KLADLMKWNQ LNAKSIIKPG QELKISE