Gene SO_3969 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3969 
Symbol 
ID1171604 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp4108149 
End bp4108835 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content51% 
IMG OID637345724 
ProductOmpA family protein 
Protein accessionNP_719499 
Protein GI24375456 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGAAGC CTTCAATTAA ATCATTGCCA GCATCTAAGC TTGCGATAGT CGTGATCACC 
AGCGCCTTGA TTGCGTCTGG TTGTACAACC GTCAACCCCT ATACCAATGA ACAACAAACT 
GCGAAAGCGA CCACGGGTGC ACTCATTGGT GCCGTTGCTG GGGCTGCCGT TGGTGTGGCG 
TCGTCAAGTA AGAGTGACCG CGGTAAAGGG GCCTTAATTG GTGCGGCCTC TGGGGCCGCC 
TTGGGTGGCG GCATTGGTTA CTATATGGAT GTTCAAGAAA CCAAATTACG CCAACAACTG 
GCATCAACAG GCGTAAGCGT GACTCGCAGC GGTGACAATA TTATTCTCAA CATGCCAAAT 
GAAGTGACTT TTGGTGTGGA TCAAACTGAG CTAAGCGATG GTGCTAAGCG GGTACTTAAC 
TCTGTTGCGC TGGTGGCGAA GGAATACAGC AAGACCCAAC TGAATGTATT AGGTTACACC 
GATAGCAGCG GATCTGATTC TTACAACTTA CGTTTGTCGC AGGTTCGCGC CAGTGAAGTA 
GGCAACTACT TGATGAGTAA AGGCGTGGCT TCCGCTCGCG TTAAGTCTAA AGGCATGGGG 
GAGGCGAGTC CTATCGCATC CAATGCCAAT GCCGAAGGGC GCGCCCAAAA CCGTCGTGTG 
GAAATAGTCT TAACTCCAAC GGGTTAG
 
Protein sequence
MMKPSIKSLP ASKLAIVVIT SALIASGCTT VNPYTNEQQT AKATTGALIG AVAGAAVGVA 
SSSKSDRGKG ALIGAASGAA LGGGIGYYMD VQETKLRQQL ASTGVSVTRS GDNIILNMPN 
EVTFGVDQTE LSDGAKRVLN SVALVAKEYS KTQLNVLGYT DSSGSDSYNL RLSQVRASEV 
GNYLMSKGVA SARVKSKGMG EASPIASNAN AEGRAQNRRV EIVLTPTG