| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3961 |
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| Symbol | rpoN |
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| ID | 1171597 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 4102103 |
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| End bp | 4103578 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637345717 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | NP_719491 |
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| Protein GI | 24375448 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCGT CACTCCAGCT CAAACTGGGT CAACAGTTAA CCATGACGCC ACAACTACAG
CAGGCCATTC GTCTGTTGCA ATTGTCGTCA TTAGAACTGC AGCAAGAGAT CCAGCAAGCC
TTAGACTCTA ATCCTCTTCT CGAGCTGGAA GAGGAGCAAT TCGATGCGCC TAGCGAACGT
AAACAAGATC TCGCTGATAC CGATTTTAGT GAAACCAGCG CCCAGCCACA GGAGCAAGAC
AACTCCACCG TGGATATTGC CGAGTCACTG ACCAAAGAAT CCCTGCCCGA AGAGCTCCCC
ATGGACACCA CTTGGGATGA AGTCTTTACC GCATCGCCCA ATTCTGGCTC GGGCGCTAGC
CGTGAAGATG ATATGCCGTT CCAAGGGGAA ACCAGCGAGG GGCTATACGA ACATTTAGAA
TGGCAAAAAA ACCTCACACC ATTCTCAGAA ACTGACTTAG CCATAGCCAC TGCCATTATT
GATGCCATAG ATGATCAAGG CTATCTCACT CAAAGCACTG AAGATATTCT CGAAGCCATG
GGCAACCCCG AGATAGAACT GGATGAAGTT GAAGCGGTAC TTAAACGTAT TCAACACTTC
GATCCCGTTG GCGTTGCGGC AAGGGATTTA AGCGAATGTT TACTGATCCA GCTATCCCAT
TTTTCTCCTG ATACTCCGCA TCTCGAAAAT GCCCGCATGT TGATCAAAGA TCATCTTGAT
CTGATCGCTG CCCGCGACTT TAGACTGTTA ATGCGTAAGA CCAAACTCAA AGAAGACGAG
TTAAGGGATA GCATTGCGCT TATCCAAACC TTGAATCCTC GTCCTGGCTT ACTCATCACT
GCAGTCGATG AAGAATATGT GGTCCCAGAT GTCTCAGTTT CGAAAAAAAA TGGCCGCTGG
GTCGTTGAGC TTAACCCCGA TTGCATGCCC AAAATCAATG TCAATCAGCA ATATGCAGCA
ATGGCTCGTA GTTCAAAAAA TCAAGCAGAC AGCCAATTTA TTCGTGGCCA TTTGCAGGAA
GCCAAATGGT TTATCAAAAG CCTTGAAAGC CGCAACGAAA CACTGCTCAA GGTGGCAAAC
TGCATAGTGC AATACCAACA AGGTTTCTTC GAATACGGTG AAGAAGCCAT GAAACCCATG
GTCCTAAACG ATATCGCCGA AGCGGTAGAA ATGCATGAGT CCACCATTTC ACGGGTGACC
ACTCAAAAAT ACATGCATAC CCCAAAAGGA CTTTTTGAAC TAAAATACTT CTTCTCAAGC
CACGTCGGGA CAGATGATGG CGGTGAGTGC TCATCCACGG CAATCAGGGC TTTCATTAAG
AAACTGGTTG CAGCGGAAAA CCAGAAAAAA CCATTGAGCG ACAGCAAGAT GGCTCAACTT
CTGGCAGAAC AGGGAATTAA CGTTGCGCGC AGAACCATTG CGAAGTATCG AGAAGCGATG
CTTATTCCCC CTTCCAATCA GCGTAAAAGT TTATAG
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| Protein sequence | MKASLQLKLG QQLTMTPQLQ QAIRLLQLSS LELQQEIQQA LDSNPLLELE EEQFDAPSER
KQDLADTDFS ETSAQPQEQD NSTVDIAESL TKESLPEELP MDTTWDEVFT ASPNSGSGAS
REDDMPFQGE TSEGLYEHLE WQKNLTPFSE TDLAIATAII DAIDDQGYLT QSTEDILEAM
GNPEIELDEV EAVLKRIQHF DPVGVAARDL SECLLIQLSH FSPDTPHLEN ARMLIKDHLD
LIAARDFRLL MRKTKLKEDE LRDSIALIQT LNPRPGLLIT AVDEEYVVPD VSVSKKNGRW
VVELNPDCMP KINVNQQYAA MARSSKNQAD SQFIRGHLQE AKWFIKSLES RNETLLKVAN
CIVQYQQGFF EYGEEAMKPM VLNDIAEAVE MHESTISRVT TQKYMHTPKG LFELKYFFSS
HVGTDDGGEC SSTAIRAFIK KLVAAENQKK PLSDSKMAQL LAEQGINVAR RTIAKYREAM
LIPPSNQRKS L
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