Gene SO_3959 details

Gene Information

• Locus tag: SO_3959
• ID: 1171595
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 4100717
• End bp: 4101268
• Gene Length: 552 bp
• Protein Length: 183 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 637345715
• Product: hypothetical protein
• Protein accession: NP_719489
• Protein GI: 24375446
• COG category: [S] Function unknown
• COG ID: [COG1934] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03002] lipopolysaccharide transport periplasmic protein LptA

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGCAAA ATAACATATT ACTTGCCAGC CTAATGCTCA TGACAAGCAT GAGCACCTTC 
GCCAAAGTCG GTGACTTACA GCAAGAAGTT AAGATTAAAG CGGTCAGCCA AACTGCTGAT 
ATTAAAAACA ATCAGATCAT TTTCTTCGGC CCAGTTGAAG TCGTACAAGG TTCAATCAAA 
ATCAATGCGG ATCAACTCCG TGCATTTTCA GCCGAAGGCG AAAACAGCAA GATTCTAGTG 
GCGACAGGTA ATCCAGCAAC CTATAGCCAG ATCCTCGACG ATGGCCGCCC AGCATCTGCT 
AGCGCCAAAG AAATTCGCTA TGAAATGGCC ACGAGGACCT TGACGCTAAC AGGCACCGCC 
ACCCTTGACC AAGCGGGTAG CCAAGTCACA GGCAATCTAA TTCGTTACAA TATCATTCAG 
CAAAAACTGA TCGCCGAAAG TACCGGCAAT GGTGACGATC GTGTGATTAC CATTATTCAA 
CCTGATAACT ATCAGGAAGA ACTGAAAAAC GCACCTGCGG ATAAACCTGT GAAAAAACAG 
GACTCTAAAT GA 

 

Protein sequence

MKQNNILLAS LMLMTSMSTF AKVGDLQQEV KIKAVSQTAD IKNNQIIFFG PVEVVQGSIK 
INADQLRAFS AEGENSKILV ATGNPATYSQ ILDDGRPASA SAKEIRYEMA TRTLTLTGTA 
TLDQAGSQVT GNLIRYNIIQ QKLIAESTGN GDDRVITIIQ PDNYQEELKN APADKPVKKQ 
DSK