Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3956 |
Symbol | |
ID | 1171592 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 4098645 |
End bp | 4099622 |
Gene Length | 978 bp |
Protein Length | 325 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637345712 |
Product | carbohydrate isomerase KpsF/GutQ family protein |
Protein accession | NP_719486 |
Protein GI | 24375443 |
COG category | [M] Cell wall/membrane/envelope biogenesis [T] Signal transduction mechanisms |
COG ID | [COG0794] Predicted sugar phosphate isomerase involved in capsule formation [COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
TIGRFAM ID | [TIGR00393] KpsF/GutQ family protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGTAGACC AATCACAATT GCGCCAATGG GGCTGTAAAG TCATCGATAT TGAAAAATCG GCCCTCGACA ACCTTTATCA GTACGTCGAT TCCGCTGAAT TCGCCCAAGC CTGTGAATTA ATTCTCAACT GTAGCGGCAA AGTCATCGTG ATGGGGATGG GGAAATCCGG CCATATTGGC AATAAAATCT CAGCCACCCT CGCCAGTACA GGCACTCCGG CCTTCTTTGT GCATCCAGGC GAAGCCAGCC ATGGCGACTT AGGCGTACTC TCTGACAACG ATATTATTCT CGCCATTTCG AACTCGGGCG AATCAAGTGA AATCCTCGCA CTGATGCCCG TTATCCAGCG TAAAGCCATT CCGGTGATAG CCATGACGGG CAAACCTGAG TCCACTATGG CACGTTTGGC CAAAATTCAT TTATGCATTG AAGTACCAGA AGAAGCCTGC CCGCTCGGGC TCGCCCCCAC GTCAAGCACC ACCGCAACCT TAGTGATGGG TGATGCGATG GCGATTGCAC TGCTGCAAGC TAAAGGCTTC ACCCGAGACG ATTTCGCTAT GTCTCACCCA GGCGGCGCCT TGGGTCGTAA ACTACTGTTA AAAGTCAGTA ATGTGATGCA CTGCGGCGAT GACTTACCGC TGGTCAAACA CGATATCTGC ATTACCGATG CCCTGTATGA AATCTCCAAA AAAGGCCTCG GCATGACCGC GATTATCGAT GAGCAAAACA AACTCGTGGG TATTTTTACC GATGGCGACT TACGCCGCGT CATCGATGCC CAAGTCAACC TGCGCACCAC ACCGATCGCC GATGTGATGA CGCGAAACTG TGTCACTATT ACTGAAAACG TATTAGCAGC GCAGGCGCTG CAAGTGATGG ACTCTAGAAA TATCAACGGC CTAATAGTGA TAGATAAAGA AAATCATCCT GTCGGCGCAC TCAATATGCT CGATATGGTT AAAGCGGGAG TCATTTAA
|
Protein sequence | MVDQSQLRQW GCKVIDIEKS ALDNLYQYVD SAEFAQACEL ILNCSGKVIV MGMGKSGHIG NKISATLAST GTPAFFVHPG EASHGDLGVL SDNDIILAIS NSGESSEILA LMPVIQRKAI PVIAMTGKPE STMARLAKIH LCIEVPEEAC PLGLAPTSST TATLVMGDAM AIALLQAKGF TRDDFAMSHP GGALGRKLLL KVSNVMHCGD DLPLVKHDIC ITDALYEISK KGLGMTAIID EQNKLVGIFT DGDLRRVIDA QVNLRTTPIA DVMTRNCVTI TENVLAAQAL QVMDSRNING LIVIDKENHP VGALNMLDMV KAGVI
|
| |