Gene SO_3945 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3945 
Symbol 
ID1171583 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp4091682 
End bp4092716 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content49% 
IMG OID637345704 
ProductIS110 family transposase 
Protein accessionNP_719476 
Protein GI24375433 
COG category[L] Replication, recombination and repair 
COG ID[COG3547] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACTATA AACTCATCAG CATTGATTTG GCAAAAACTG TCTTCCAAGT CGCAGCCTTT 
AACCCTGATA ACACCATTGC TTTTAACCGT AAAATCAATC GCCCAGCATT ACTTGACATG 
CTTAGGCAAT GCGAGCCGAC ACTCGTGGTG ATGGAAGCCT GCTACAGCGC TAATTACTGG 
GGGCGTACAA TCGAAAAACT CGGCCATACC GTCAAGCTTA TCCCCGCCAG AATGGTGAAA 
GCCATGCTGG TTGGTAATAA GAATGACGCC AATGATGCGG TTGCCATCGG AGAAACGGCT 
GGCCGCCCTA AAGTGAGTCT ACTTCGCCCT AAAACGGTCG AGCAGCAGGA TATTCAATCT 
TTACTGCGCA TTCGTGAGCG CTTGGTGGAG AATCGCACGG CTAACTGCAA TCAACTGCGT 
GGTTTTCTCG CGGAATACGG CCTGATTGTC GCAAAGACCC GCCGCCAGTT GATGTTAGCC 
ATTCCGCTCA TTCTTGAAGA TGCTGACAAC GAATTATCCA CGGTTGCCAG AGGGTTTATT 
CAACGACTCT ATGAGTTTCA GTTGTATTTA AATGAACAAA TCGACCAGGT TGCACAGGAC 
ATATTAGCCC TTGCCCAAGC CATGCCACAG TATCCATTAT TGCTAACCAT CCCCGGTGTC 
GGCCCTATCG TCGCATCCAC ATTATTAGCC AGTATTAATG AAGTTAATGA TTTTAAAAAT 
GGCCGGCAAT TGGCGGCATG GCTAGGGCTC ACTCCTTCAC AATACAGCAG TGGCACGACC 
AATCGGCTCG GCAAGATAAC CAAGCGCGGA AATCAAACGC TCCGGCGGTT ACTTATCCAT 
GGCGCAAGAA CCGTGGTGAA CTGGTGCGAT AAGAAAGACG ACTCACTTAG CCTGTGGTTA 
CAACGGCTTA AACAGCGTCA ACACGTCTGC AAAGTGACGG TTGCCTTGGC CAATAAGATG 
GCTCGGATGG TGTTTGTAGT GATGAGCCGC GGACAAGCAT TTGATATGAA TAAGGCCTGT 
AAATTGGCAA CGTAA
 
Protein sequence
MNYKLISIDL AKTVFQVAAF NPDNTIAFNR KINRPALLDM LRQCEPTLVV MEACYSANYW 
GRTIEKLGHT VKLIPARMVK AMLVGNKNDA NDAVAIGETA GRPKVSLLRP KTVEQQDIQS 
LLRIRERLVE NRTANCNQLR GFLAEYGLIV AKTRRQLMLA IPLILEDADN ELSTVARGFI 
QRLYEFQLYL NEQIDQVAQD ILALAQAMPQ YPLLLTIPGV GPIVASTLLA SINEVNDFKN 
GRQLAAWLGL TPSQYSSGTT NRLGKITKRG NQTLRRLLIH GARTVVNWCD KKDDSLSLWL 
QRLKQRQHVC KVTVALANKM ARMVFVVMSR GQAFDMNKAC KLAT