Gene SO_3943 details

Gene Information

• Locus tag: SO_3943
• Symbol: degS
• ID: 1171581
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 4088588
• End bp: 4089670
• Gene Length: 1083 bp
• Protein Length: 360 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637345702
• Product: protease DegS
• Protein accession: NP_719474
• Protein GI: 24375431
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
• TIGRFAM ID: [TIGR02038] periplasmic serine pepetdase DegS

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAATAA AAGACACCCT GTTATATCTC GGTAAAGCCG TGCTTTTCGG CCTTATTATG 
GCAGCCATGT TTTTGTTAGT AACTCATTAC TTCGACAATA AGAGTCTTGG CAACTCATTA 
CTACAAAACC GCGGTAACAA CACGGTTGAA CTCTCCTTTG CCAAGGCCGT GCGTCGCGCA 
GCCCCTGCCG TCGTCAATAT TTACAGCTTG AGTATCGATC AGAGCCGTCC ATTGAATTCT 
GGCTCACTCC AAGGTCTAGG ATCTGGGGTG ATCATGAGTA AAGAAGGTTA TATTCTCACT 
AATTATCATG TGATTAAAAA AGCCGATGAG ATCGTCGTCG CGCTGCAAGA TGGCCGCAAG 
TTCACCTCTG AAGTGGTGGG GTTTGATCCC GAAACCGATC TTTCAGTGCT TAAGATCGAA 
GGCGATAATC TCCCCACTGT GCCAGTCAAT CTCGACAGCC CCCCCCAGGT TGGCGATGTG 
GTATTAGCCA TTGGTAACCC CTATAACCTT GGCCAAACGA TTACCCAAGG CATTATCAGC 
GCCACAGGCC GTAACGGCTT AAGTTCGGGT TATTTAGACT TTTTACAGAC CGATGCAGCA 
ATTAACGCCG GTAACTCCGG AGGTGCATTA ATTGACACTA ATGGTAGCCT GATTGGCATC 
AACACCGCTG CGTTTCAAGT GGGCGGTGAA GGTGGTGGCC ACGGCATTAA CTTCGCGATC 
CCGATTAAAC TCGCCCACAG CATTATGGGC AAACTGATCA AAAATGGCCG TGTGATCCGT 
GGCGCCTTAG GGATTTCGGG CGAACCGATT AACCCTGTTG TGGCGCAAAT CCTTAACCTC 
CCCGATTTGC GTGGCGTATT AGTCACTGGC ATCGACCCTA ATGGTCCTGC GGCACGTGCG 
CAGCTACTAC CAAGGGATGT GATCATTAAA TATGATGGTG AAGATGTGCC AGGGGTTGAA 
ATGCTGATGG ATCGAATTGC CGAAACAACG CCCGGCAAGA AAGTCATGAT GACAGTGATC 
CGCCAAGGCA AACAGCAAGA ATTACCTGTA ATCATCGATG AAAAAGTGGT TGTTAGTAAT 
TAA 

 

Protein sequence

MTIKDTLLYL GKAVLFGLIM AAMFLLVTHY FDNKSLGNSL LQNRGNNTVE LSFAKAVRRA 
APAVVNIYSL SIDQSRPLNS GSLQGLGSGV IMSKEGYILT NYHVIKKADE IVVALQDGRK 
FTSEVVGFDP ETDLSVLKIE GDNLPTVPVN LDSPPQVGDV VLAIGNPYNL GQTITQGIIS 
ATGRNGLSSG YLDFLQTDAA INAGNSGGAL IDTNGSLIGI NTAAFQVGGE GGGHGINFAI 
PIKLAHSIMG KLIKNGRVIR GALGISGEPI NPVVAQILNL PDLRGVLVTG IDPNGPAARA 
QLLPRDVIIK YDGEDVPGVE MLMDRIAETT PGKKVMMTVI RQGKQQELPV IIDEKVVVSN