Gene SO_3942 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3942 
Symbol 
ID1171580 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp4087110 
End bp4088462 
Gene Length1353 bp 
Protein Length450 aa 
Translation table11 
GC content50% 
IMG OID637345701 
Productserine protease 
Protein accessionNP_719473 
Protein GI24375430 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACGA AATTATCTGT ACTTTCAGCC GCAATGTTAG CCGCAACCCT GACAATGATG 
CCAGCTGTCT CACAGGCCGC TATTCCGCAA TCTGTTGAGG GACAATCCAT ACCCAGTCTT
GCGCCCATGT TAGAGCGTAC GACTCCCGCC GTGGTTTCTG TGGCGGTTTC TGGAACCCAT
GTTTCTAAAC AACGCGTGCC CGATGTGTTC CGTTATTTCT TTGGCCCTAA TGCGCCACAA
GAACAAGTGC AAGAGCGTCC ATTTAGAGGC TTAGGCTCCG GCGTTATTAT CGATGCCGAC
AAAGGCTATA TTGTCACCAA TAACCACGTG ATCGACGGTG CCGATGATAT CCAAGTGGGT
TTACACGATG GCCGTGAAGT CAAAGCCAAA TTGATTGGTA CTGACTCCGA ATCCGACATT
GCGTTATTGC AAATCGAGGC TAAAAATCTG GTCGCGATTA AAACCTCTGA TTCTGATGAA
CTGCGCGTCG GTGACTTTGC CGTCGCTATC GGTAACCCCT TCGGTCTAGG ACAAACCGTA
ACATCAGGGA TTGTCAGTGC CCTAGGCCGT AGCGGTTTAG GCATTGAAAT GCTTGAAAAC
TTTATCCAAA CCGACGCAGC CATCAACAGT GGTAACTCGG GCGGCGCTCT AGTTAACCTT
AAAGGCGAAC TGATCGGTAT TAACACGGCT ATCGTCGCGC CTAACGGCGG TAACGTAGGT
ATCGGTTTTG CGATTCCAGC AAACATGGTG AAAAACCTCA TCGCACAGAT TGCTGAGCAT
GGTGAAGTTC GCCGCGGCGT ATTGGGGATT GCTGGCCGTG ATTTAGATAG CCAACTTGCC
CAAGGCTTTG GCTTAGACAC TCAACACGGT GGCTTTGTGA ATGAAGTTAG CGCGGGCAGT
GCCGCCGAAA AAGCTGGTAT TAAGGCGGGC GATATTATCG TTAGCGTCGA TGGCCGTGCG
ATCAAGTCGT TCCAAGAGCT GCGTGCTAAA GTCGCGACGA TGGGCGCTGG CGCTAAAGTC
GAACTGGGCC TTATCCGTGA TGGCGATAAG AAAACTGTCA ACGTCACCTT AGGTGAAGCA
AACCAAACGA CAGAAAAAGC AGCTGGTGCA GTGCATCCTA TGCTACAAGG TGCCTCATTA
GAAAATGCCT CTAAAGGGGT CGAAATTACC GATGTTGCAC AAGGATCTCC AGCGGCAATG
AGCGGTCTGC AAAAAGGCGA TTTGATTGTC GGTATCAACC GTACTGCGGT TAAAGATCTT
AAATCGCTCA AAGAGCTGCT CAAAGATCAA GAAGGTGCTG TCGCCCTGAA GATTGTCCGT
GGTAAGAGCA TGCTTTACTT AGTGCTTCGT TAA
 
Protein sequence
MKTKLSVLSA AMLAATLTMM PAVSQAAIPQ SVEGQSIPSL APMLERTTPA VVSVAVSGTH 
VSKQRVPDVF RYFFGPNAPQ EQVQERPFRG LGSGVIIDAD KGYIVTNNHV IDGADDIQVG
LHDGREVKAK LIGTDSESDI ALLQIEAKNL VAIKTSDSDE LRVGDFAVAI GNPFGLGQTV
TSGIVSALGR SGLGIEMLEN FIQTDAAINS GNSGGALVNL KGELIGINTA IVAPNGGNVG
IGFAIPANMV KNLIAQIAEH GEVRRGVLGI AGRDLDSQLA QGFGLDTQHG GFVNEVSAGS
AAEKAGIKAG DIIVSVDGRA IKSFQELRAK VATMGAGAKV ELGLIRDGDK KTVNVTLGEA
NQTTEKAAGA VHPMLQGASL ENASKGVEIT DVAQGSPAAM SGLQKGDLIV GINRTAVKDL
KSLKELLKDQ EGAVALKIVR GKSMLYLVLR