Gene SO_3899 details

Gene Information

• Locus tag: SO_3899
• Symbol: parE
• ID: 1171539
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 4046861
• End bp: 4048747
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637345660
• Product: DNA topoisomerase IV subunit B
• Protein accession: NP_719430
• Protein GI: 24375387
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
• TIGRFAM ID: [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGAATC AATACACCTC TGACGCCATT GAAGTTCTTA ACGGACTTGA CCCAGTAAAA 
CGCCGTCCAG GTATGTATAC CGATACCACC CGACCTAACC ATTTAGGCCA AGAGGTCATA 
GATAACAGTG TCGATGAAGC CTTAGCAGGT CATGCTACTA AAATCGAAGT TGTGCTCCAC 
ACCGATAACT CACTGGAAGT CACTGACGAT GGTCGTGGTA TGCCGGTAGA TATTCATCCT 
GAGGAAGGTA TTCCAGGGGT TGAATTGATC CTCACTAAAC TGCATGCCGG CGGTAAGTTT 
TCAAATAAAA ATTACCAATT TTCCGGTGGT TTGCACGGTG TGGGGATTTC AGTTGTTAAC 
GCCCTGTCTC GCAGAGTCGA AGTCACAGTG CGTCGCGATG GCCAAGTGTA TGATATTGCC 
TTTGAAAATG GCTTTAAAGT TGAAGAGCTT AAAGTCACTG GCACCTGCGG TCGGCGCAAT 
ACTGGTACTC GAGTGCATTT CTGGCCCGAC ACAAGTTATT TTGATTCGCC GAATTTCTCC 
AATTCAAAAC TCATCTATTT ACTGCGTGCT AAGGCGGTAT TGTGCCCAGG CCTTAGAATT 
AAGTTCACTA ATAAGCACAC TAACGAAGTA CATGAGTGGT ACTACGAGAG TGGCTTAACC 
GATTATCTCA AGGCTGCCGT GGGCGATAAT ATTATGCTGC CGGAAGAGCC TTTTATCGGC 
AGTTTTAAGG GGCAAATTGA AGCGGCAGAT TGGGCGATTA CGTGGTTGCC AGAGGGCGGG 
GAGTCGATCA ACGAAAGTTA TGTCAACCTG ATCCCAACCC CCCTCGGTGG TACCCATGTT 
AATGGTTTCC GTCAAGGTTT GCTGGAATCG ATGCGCGAGT TTTGTGAGTT TCGCAATCTG 
ATCCCCCGTG GGATCAAGCT CTCTCCTGAG GATATTTGGG ACCGTGCGGC GTTTATTCTG 
TCGGTGAAGA TGCAAGACCC ACAGTTTGCA GGGCAAACTA AAGAGAAGCT TTCTAGCCGT 
CAAAGCTCAG CCTTTGTTTC TGGCATTGTC CGCGATGCGT TTTCGCTTTG GTTAAATTCG 
AATACCGAAT TGGCCGAATC ATTGGCTGAG ATGTGTATCA ATAACGCGCA AAAACGTTTA 
AAAGCCGCCA AAAAGGTCGC CCGTAAAAAA GTTACTTCAG GCCCTGCATT GCCGGGTAAA 
CTGACCGATT GTAGTGGACA AGATCCGATG CGCGGTGAGT TATTCCTCGT GGAAGGTGAC 
TCTGCGGGAG GCAGTGCTAA ACAGGCTCGG GATCGTGAGT TTCAAGCCAT TATGCCGCTG 
CGTGGAAAAA TCTTAAATAC CTGGGAAGTG GATGCTTCGC AGGTATTGGC CTCGCAGGAA 
GTGCATGATA TTTCTGTGGC TATTGGTTGC GACCCCGATA GCAATGATAT TTCTGAGTTA 
AGGTATGGCA AAATCTGTAT TCTCGCCGAT GCTGATTCCG ATGGATTGCA TATTGCAACT 
TTACTCTGTG CGCTGTTTTT GAAGCATTAC CGAGTGTTGG TGGAACAGGG CCATGTTTAT 
ATTGCCATGC CGCCACTGTT CCGTATTGAT ATAGGTAAAG ATGTCTATTA CGCCTTAGAT 
GATGCCGAGA AAGAAGGTGT GCTCGATCGT ATCAACGCGG AAAATAAGAA AGGTAAGGTT 
CAGGTAACAC GCTTCAAAGG CTTGGGTGAA ATGAATCCCC TCCAATTGCG TGAAACAACG 
ATGGATCCAA ACACTCGCCG TTTAGTCCAG TTAACCATCG ATGATGCGGA AGAAACCGAT 
TCCCTGATGG ATATGCTGCT GGCTAAAAAG CGTTCACCCG ATCGTAAAAA TTGGCTCGAA 
GATAAGGGTG ACATGGCGGT ACTTTGA 

 

Protein sequence

MTNQYTSDAI EVLNGLDPVK RRPGMYTDTT RPNHLGQEVI DNSVDEALAG HATKIEVVLH 
TDNSLEVTDD GRGMPVDIHP EEGIPGVELI LTKLHAGGKF SNKNYQFSGG LHGVGISVVN 
ALSRRVEVTV RRDGQVYDIA FENGFKVEEL KVTGTCGRRN TGTRVHFWPD TSYFDSPNFS 
NSKLIYLLRA KAVLCPGLRI KFTNKHTNEV HEWYYESGLT DYLKAAVGDN IMLPEEPFIG 
SFKGQIEAAD WAITWLPEGG ESINESYVNL IPTPLGGTHV NGFRQGLLES MREFCEFRNL 
IPRGIKLSPE DIWDRAAFIL SVKMQDPQFA GQTKEKLSSR QSSAFVSGIV RDAFSLWLNS 
NTELAESLAE MCINNAQKRL KAAKKVARKK VTSGPALPGK LTDCSGQDPM RGELFLVEGD 
SAGGSAKQAR DREFQAIMPL RGKILNTWEV DASQVLASQE VHDISVAIGC DPDSNDISEL 
RYGKICILAD ADSDGLHIAT LLCALFLKHY RVLVEQGHVY IAMPPLFRID IGKDVYYALD 
DAEKEGVLDR INAENKKGKV QVTRFKGLGE MNPLQLRETT MDPNTRRLVQ LTIDDAEETD 
SLMDMLLAKK RSPDRKNWLE DKGDMAVL