Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3884 |
Symbol | |
ID | 1171527 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 4030637 |
End bp | 4031569 |
Gene Length | 933 bp |
Protein Length | 310 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637345647 |
Product | phage integrase family site specific recombinase |
Protein accession | NP_719415 |
Protein GI | 24375372 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTACAG CGACTGCTTA TGCGCTCTAT TTGAGCCGTC TTGCGCCCAA CAGTCAGCGC TCGATTGCTT CGCAGATGCG CAGCATTGCA CAGCTGATGG ACTGGCCTGA CGAAGTGATA GGCAAGCAAC TCAGCAGCAT TAACTATCAA CAAGCGATGC AGATACGGGC ATTGCTGATA CACGAGCAGT GGTCGGCACG CTCGATTAAC CGTGCGATGA CCGCGATTAA GAGTATTGTC AAAGTCGCCG CTTTGATGGG TGAAGCGGAT ATGCAGCAAG TCGCGCACAT CAACAGCATC GCTAACATGA AACACGGTGC CCATCAGGGT AATCCCCTGA GTGCAGAGCA AGTCACTAAG CTGCTCGCCT TGCTTTCCAA ACGCCAAGAC ACGTATGGGC TTCGCACATT AGCTATCTTT GCGTTGTTCC TCGGAACGGG GTTACGCCGT AGTGAACTAG CGGCACTGAC ACTTGCCGAT TATGACAGTG CAACCTCAAC AATTAAGGTG GTTGCAGGTA AAGGCAACAA GAGCCGTATT CTGTTCTTAC CCGATTGGGT TGAACAGCAT GTCATCGCTT GGCTCAACGT GCGCAAGATG CAATTGGGGC CACTCATTTG CCACTGTCGC ACGACTGGCA TTATTGTCCA TTACCGCCCT GTGAGTCGGG ATGCACTCTA TCGGTTAGTC AAAGATAAAC TTGGAGATAT CGGCGTAGTA GGTGCATCAC CCCATGATTT GCGCCGCACC TTTATTACTC GGCTACTGGA GCAAAACGTC GATATCAACA CCGTGCGCCA AATGGCAGGC CATGCAGATA TCAGTACTAC CACCATTTAT GACAAGCGTG GTGATGCGTT TATGCGTGAA GCCGCTGCCA CCCTGAACTA TGTGTCAGCA CCGAACGAAC GGGGTGGGAA AACAAGATGC TAA
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Protein sequence | MTTATAYALY LSRLAPNSQR SIASQMRSIA QLMDWPDEVI GKQLSSINYQ QAMQIRALLI HEQWSARSIN RAMTAIKSIV KVAALMGEAD MQQVAHINSI ANMKHGAHQG NPLSAEQVTK LLALLSKRQD TYGLRTLAIF ALFLGTGLRR SELAALTLAD YDSATSTIKV VAGKGNKSRI LFLPDWVEQH VIAWLNVRKM QLGPLICHCR TTGIIVHYRP VSRDALYRLV KDKLGDIGVV GASPHDLRRT FITRLLEQNV DINTVRQMAG HADISTTTIY DKRGDAFMRE AAATLNYVSA PNERGGKTRC
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