| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3859 |
|---|
| Symbol | |
|---|
| ID | 1171502 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 4004991 |
|---|
| End bp | 4006886 |
|---|
| Gene Length | 1896 bp |
|---|
| Protein Length | 631 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637345623 |
|---|
| Product | cyclic nucleotide phosphodiesterase, putative |
|---|
| Protein accession | NP_719391 |
|---|
| Protein GI | 24375348 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCTATCTT ACCCACGCTA TTTAGCCGTA TTCCTTCTCA TCATAGGGCA ATCATGTCTT
GCTTTTGCTG AAGAGCAGCC ACAGGTCGGT CAGCTATTCA AACTATTTGA TAGCGGTGAG
TCTATGCCGC GTGCAACCAT CGAGCAAAAT ATTGCGCTCT TGGAAAAGCT CATCTCAAGT
GATGATATCG AGCGTATTGA AAAACTAAAC CAAATCAAGT GCTGGAACCA AGCTTCAGAT
ACTGAAGAGG AAATCGCTAA AGCACTCAAT TATGCCGAGC AAGCACTCTC GCAGATCCCA
TCAACGGCTT CGACTCATTT TATTACCGAT ATCAATCTTT GCCGAGCTTG GTTTTTACAA
CTGACAGGCG ATATTAACGG CGCAATGGAG GGCTATACCA AAAGCGTTCA AAGCGCCTAT
GAACATGAGG ATATAAAACT CATTGCCGAT GCCCGCAGTC TTCGTGGTGC CTTGTATTCC
TACACAGGAG ACTTTTCAGA GGCATTGGAT GATTTGGTGA CCGCACAAGG ACTTTATGAA
TCGTTAAATC TCACGGGTTG GGCGAATATA AACTTGACCG ATATCGCCAC CAGCTTTAGA
CGTTATGGCG ACCCTGAAAG TGCAATAAAA TACTACAAAA AACTCAAAGA GTTATATTTG
AAAAATGGCA ATAAAGAGCA AGTTGCGAAT GTAATGTCAG AAATCGGAAT CGCCCTGGAT
GAAATGGGTA AACATGAGCA AGCCATTGAA CACTTTCGCT TTAGTTACCA GTATTTTAAA
GACCAGAAGC TCAACATTGT TGCCGCGATC AACGCGACCA ATATCGCCTA TAGCCTTATT
CAGTTAAACC GCTTAGATGA AGCTGAAAAC TACTTAAATG AAGCGGCACC CGACATCAGC
GAAAATGAAC CTGCTGCATA TAGTTTTATG AAGCTGTTTA TGGGGAAAAT ACGCAACCAA
CAAGGTCGTT ACCAAGAAGC CCTAGATGAA CTTAGCGCCG CTGAACATGC ATTTCGCGTG
ATGCATAATG ACCGAGGCCT AATCCAACTA TTACAACTCA AAAGTGATAT CTATGCCGCT
ATGGAGGACT TACCACAGGC CTACCATATT CTTCAGGAAT TTATTGCACT CACAAAAAAA
GTAGATGACA GCTCAATTGC ACATCAAACA ACTGAGCTAA AAGTAAAGTT CGACACGAGC
TGGATCGAAT CAGAAAACAA ACGATTGATC GATAATCAAA AGTTGAAGGA ACAAGAATTA
ACCCTGCTCG AAAAAAATAA GTCGCTACAG CTCATCATTC TGTTACTCAC AGGCTGTATT
TTGGCCACTG TGTCACTGTT TGCTTATAAA CAAGTACACA GAAACCGTCA GCTGCAAACC
ATTGCATTAA CCGATTATCT CACCCAATTA CCCAATCGCA GGCATATTTA TGCCCAAGCA
GAGCAGTATT TTCAGCTAGC ACTTAAACAA CAAATTCCTT TTTCGATCAT TATCTTCGAT
GCGGATCATT TTAAAAAAAT CAACGACAAC TTCGGCCATG AAATTGGCGA TCAAGCTCTT
TTGACTATTG CCGAAGCGAG CAAAACATTA ACAACGGATC GAAATCTGGT TGGCAGAATA
GGGGGTGAAG AATTTTTGAT TTTATTACCT AATACGGATG CCGATCGTGC ATGGAAACTT
GCCCATGAGT TACAAACTTT AATCACACGA TTTGGGGCAA TTAATTTACC AGTAGAGCTA
AAACTGACCG TCAGTGCAGG GGTGGCGACC TTGCCCATCC AATCAGAATT ACAAGATCAA
AACTTTGCGC GTTTACTAAA ACGGGCTGAT AACGCACTAT ATGAAGCCAA AAATGCCGGA
AGAAATTGCG TTAAAGCAGC TGAAATCACG GGATAA
|
|---|
| Protein sequence | MLSYPRYLAV FLLIIGQSCL AFAEEQPQVG QLFKLFDSGE SMPRATIEQN IALLEKLISS
DDIERIEKLN QIKCWNQASD TEEEIAKALN YAEQALSQIP STASTHFITD INLCRAWFLQ
LTGDINGAME GYTKSVQSAY EHEDIKLIAD ARSLRGALYS YTGDFSEALD DLVTAQGLYE
SLNLTGWANI NLTDIATSFR RYGDPESAIK YYKKLKELYL KNGNKEQVAN VMSEIGIALD
EMGKHEQAIE HFRFSYQYFK DQKLNIVAAI NATNIAYSLI QLNRLDEAEN YLNEAAPDIS
ENEPAAYSFM KLFMGKIRNQ QGRYQEALDE LSAAEHAFRV MHNDRGLIQL LQLKSDIYAA
MEDLPQAYHI LQEFIALTKK VDDSSIAHQT TELKVKFDTS WIESENKRLI DNQKLKEQEL
TLLEKNKSLQ LIILLLTGCI LATVSLFAYK QVHRNRQLQT IALTDYLTQL PNRRHIYAQA
EQYFQLALKQ QIPFSIIIFD ADHFKKINDN FGHEIGDQAL LTIAEASKTL TTDRNLVGRI
GGEEFLILLP NTDADRAWKL AHELQTLITR FGAINLPVEL KLTVSAGVAT LPIQSELQDQ
NFARLLKRAD NALYEAKNAG RNCVKAAEIT G
|
|---|
| |