Gene SO_3840 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3840 
Symbol 
ID1171484 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp3989913 
End bp3990446 
Gene Length534 bp 
Protein Length177 aa 
Translation table11 
GC content46% 
IMG OID637345606 
ProductECF subfamily RNA polymerase sigma factor 
Protein accessionNP_719373 
Protein GI24375330 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACGGCAG GGAGACTCCC ACTCGATAAA GCGATGTCAG AATTTGATCT CGTCACCTTA 
GCAAGCCAAG GTAATCGAGC CGCATTTAAG CAACTGTATT TAAACCATCA TAAAAAGGTG 
TATGCCTTAT CGTTGCGGCT TTGCGGCCAA GCCTCGCAGG CGGAAGAAAT TACCCAAGAG 
TGCTTTATTT TGGTCTGGCA AAAATTACCG CAATTTAAGG GAGAAAGTCA GTTTTCGACT 
TGGCTACACA CGCTTTGTGT AAACCAAGCA CTGAGTTTTA TTCGTAAGCA AAAATCCTTT 
TGGGCGCGCT TTATTCCTAT GGAAAGCGAT GCTGAACACC CAAGCTCAGA CGAAAACTAT 
CAAGGGCTAG ACAAATTGAT CCTCAAACTG CCAGAGCGGG CGCGCATTGT GTTTGTGCTC 
TGTGCCATTG AAGGTTATCA ACACGAAGAA ATTGCCCAAT TGCTCGGTAT TGCCGTAGGT 
ACCAGTAAGA CCCAATACCA CAGAGCCAAG CAATTACTAC AGGAGATGCT GTAA
 
Protein sequence
MTAGRLPLDK AMSEFDLVTL ASQGNRAAFK QLYLNHHKKV YALSLRLCGQ ASQAEEITQE 
CFILVWQKLP QFKGESQFST WLHTLCVNQA LSFIRKQKSF WARFIPMESD AEHPSSDENY 
QGLDKLILKL PERARIVFVL CAIEGYQHEE IAQLLGIAVG TSKTQYHRAK QLLQEML