Gene SO_3833 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3833 
SymbolprfA 
ID1171478 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp3982400 
End bp3983491 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content51% 
IMG OID637345600 
Productpeptide chain release factor 1 
Protein accessionNP_719366 
Protein GI24375323 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0216] Protein chain release factor A 
TIGRFAM ID[TIGR00019] peptide chain release factor 1 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGGAAT CCGTTATCCG CAAGCTGGAA GGCTTGCTCG AGCGCAACGA AGAAGTCTTA 
GCTTTGCTTG GCGATGCGTC GGTTATCGCC GATCAGGATC GTTTTCGTGC GTTATCCAAA 
GAATATTCCC AGTTAGAAGA AGTGGTTGCA GGCTTTAAAG CCTACCAGCA AGCACAGGCT 
GATCTCGAAT CTGCCAAGGA AATGCTGGAA GAAGATGACG CCGAAATGCG CGAAATGGCG 
CAGGAAGAAA TCAAGGCCGC TAAAGTAGAG CTTGAGCGTC TCGAAGCCGA GCTGCAAATT 
CTGTTACTGC CAAAAGATCC TAACGACGAC ACCAACGCCT TTATCGAAAT TCGCGCCGGT 
GCGGGTGGTG ACGAAGCGGC GATCTTTGCC GGCGACTTAT TCCGTATGTA TAGCCGTTAT 
GCTGAAGCCA ACCGTTGGCA GCTCGAGATT ATGAGTTCAA ACGAAGGTGA ACACGGCGGC 
TTTAAAGAAA TCATTGTTAA AGTCAGTGGT GAAGGTGCCT ACGGTAAACT CAAATTTGAA 
TCCGGTGGTC ACCGCGTTCA ACGTGTGCCT GAAACTGAAT CCCAAGGTCG TGTACACACT 
TCTGCTGTGA CTGTGGTAGT GATGCATGAA GTACCTGAAG CGGAAGCGAT TTCCATAAAT 
CCTGCCGATC TGAAGGTTGA TACTTTCCGC TCATCGGGCG CGGGTGGTCA GCACGTTAAC 
AAAACTGATT CTGCGATTCG TATTACCCAT ATTCCGACAG GGATTGTGGT GGAATGCCAA 
GATCAACGCT CGCAACATAA AAACCGCGCC CAAGCGATGA GCGTGTTAGC GGCGCGTATC 
CAAGCCGTTG AAGATGAAAA ACGCCGCAGC GCCGAAGAGT CAACTCGCCG TAGTCTGGTG 
GCTAGTGGTG ACCGCTCTGA ACGTGTGCGT ACCTACAACT TCCCGCAGGG TCGCGTGAGT 
GAACACCGTA TCAACTTAAC CTTATATCGC TTGAACGAAG TGATGGAAGG GGACTTAGAC 
GCGATTTTAG GACCACTGAT GCAAGAGCAT CAGGCAGATT TGTTGGCCGC ACTTGCTGAC 
GAGCAGGGGT AA
 
Protein sequence
MKESVIRKLE GLLERNEEVL ALLGDASVIA DQDRFRALSK EYSQLEEVVA GFKAYQQAQA 
DLESAKEMLE EDDAEMREMA QEEIKAAKVE LERLEAELQI LLLPKDPNDD TNAFIEIRAG 
AGGDEAAIFA GDLFRMYSRY AEANRWQLEI MSSNEGEHGG FKEIIVKVSG EGAYGKLKFE 
SGGHRVQRVP ETESQGRVHT SAVTVVVMHE VPEAEAISIN PADLKVDTFR SSGAGGQHVN 
KTDSAIRITH IPTGIVVECQ DQRSQHKNRA QAMSVLAARI QAVEDEKRRS AEESTRRSLV 
ASGDRSERVR TYNFPQGRVS EHRINLTLYR LNEVMEGDLD AILGPLMQEH QADLLAALAD 
EQG