| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3827 |
|---|
| Symbol | kdsA |
|---|
| ID | 1171472 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 3977374 |
|---|
| End bp | 3978222 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637345594 |
|---|
| Product | 2-dehydro-3-deoxyphosphooctonate aldolase |
|---|
| Protein accession | NP_719360 |
|---|
| Protein GI | 24375317 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR01362] 3-deoxy-8-phosphooctulonate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAATA AAATCATAAA GTTAGGGTCA ATCGAAATTG CAAACGATAA ACCTTTTGTG
CTATTTGGTG GCATGAATGT GCTTGAATCT CGCGATCTGG CGATGTCGAT TGCTGAAACC
TATGCTGAAG TGACCCAGAA ACTAGGCATC CCCTATGTTT TCAAGGCATC ATTCGATAAG
GCGAATCGCT CTTCTGTTAA CTCTTACCGT GGCCCAGGTA TGGAAGAAGG CTTAAAGATT
TTTGAAGAAA TCAAAAAGAC CTTTAACCTG CCATTGATCA CCGATGTGCA TGAGACTTAC
CAATGTGCAC CTGTAGCTGA AGTGGTTGAT ATTATCCAGT TGCCAGCTTT TTTAGCCCGT
CAAACAGACT TAGTTGTCGC TATGGCGAAA ACTGGCGCTA TCATCAATGT GAAAAAACCA
CAGTTTTTAG CACCCCACGA AATGCGTCAT ATCATCACGA AATTTAACGA AGCGGGTAAT
GATGAGATTA TCCTCTGTGA ACGTGGTTCA TGCTTTGGTT ACAATAACTT AGTCGTGGAT
ATGCTGGGTA TGGATGAGAT GAAACAATCG GGTTACCCAG TGATTTTCGA CGCAACCCAC
GCATTGCAAC GTCCTGGTGG CCGTGCCGAT TCTGCGGGCG GTCGTCGTGC TCAAGCGACT
GAACTAGCCC GTAGTGGTAT GGCGTTAGGT TTAGCGGGTC TGTTTATTGA GGCTCACCCC
GATCCTGATA ATGCTAAGTG TGATGGCCCC TGTGCGTTAC CACTTCACCA ATTAGAGAAT
TATCTCAAGC AGATGAAGGC AATTGATGAT TTAGTCAAAT CCTTCGAGCC AATTGATACC
AGCAAATAA
|
|---|
| Protein sequence | MSNKIIKLGS IEIANDKPFV LFGGMNVLES RDLAMSIAET YAEVTQKLGI PYVFKASFDK
ANRSSVNSYR GPGMEEGLKI FEEIKKTFNL PLITDVHETY QCAPVAEVVD IIQLPAFLAR
QTDLVVAMAK TGAIINVKKP QFLAPHEMRH IITKFNEAGN DEIILCERGS CFGYNNLVVD
MLGMDEMKQS GYPVIFDATH ALQRPGGRAD SAGGRRAQAT ELARSGMALG LAGLFIEAHP
DPDNAKCDGP CALPLHQLEN YLKQMKAIDD LVKSFEPIDT SK
|
|---|
| |