| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3805 |
|---|
| Symbol | mpl |
|---|
| ID | 1171449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 3959211 |
|---|
| End bp | 3960608 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637345574 |
|---|
| Product | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase |
|---|
| Protein accession | NP_719341 |
|---|
| Protein GI | 24375298 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0773] UDP-N-acetylmuramate-alanine ligase |
|---|
| TIGRFAM ID | [TIGR01081] UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACGTAC ATATTTTAGG AATTTGTGGA ACCTTCATGG GTGGTCTTGC ACTCTTGGCT
AGGGCAAAAG GGCACAGAGT GACAGGCTCG GATGCCAACG TCTATCCACC TATGAGTACG
CAGCTTGAAG AGCAAGGTAT TGAACTTATT CAAGGTTTTG ACCCGAGCCA ATTAGGTGAC
GCAGGTAGTT ATCCCGATAT CGTGGTGATT GGTAATGCCA TGAGCCGTGG TAATCCTTGT
GTTGAGGCCG TATTAAATCT TGGGATACCT TACACCTCTG GCCCCCAATT TTTAGTCGAT
CATATTCTGC CTGAACGTTG GGTATTAGCC GTTTCTGGCA CCCATGGAAA AACCTCCACC
TCCAGTATGC TCGCTTGGAT TTTAGAGGAT TGTGGTTATC AGCCCGGTTT CTTGATTGGC
GGCGTACCGC AAAACTTTGG CGTGTCGGCC CGTTTAGGTG AGTCGGCATT TTTTGTGGTT
GAAGCCGATG AATACGACAG CGCCTTCTTC GATAAGCGTT CTAAATTTGT GCATTATCAT
CCACGTACCT TGGTAATTAA CAACCTCGAG TTTGACCATG CCGATATTTT TGCTGATTTA
GCAGCGATTC AAAAACAGTT CCACCACCAG ATCCGTACAG TCCCTGGTCA AGGCAAAGTG
ATTTGGCCCG CCGACTCCCA CGCGGTAAAG CAAACCATTG ACATGGGCTG CTGGAGCGAG
CAGGAGACTT ACCACTCATC AGAGGTGACC AAGGGCTGGC ATGCTAAGGC GCTAAGTGAC
GATTGCCACG AGTTTGAAGT GTTTTTCGAT GGCCAATCCC AAGGTGTGCT CGATTGGGCG
CTGATTGGTC AGCACAATAT CGAAAACGCT GTGATGGCGA TCGCGGCGGC GCGCCATGTT
GGGGTTGCGC CGAGTGCGGC GATCGATGCA TTGGCGCGAT TTGTACCACC GAAACGTCGC
CTAGAGTTAT TGGACACAGT GAATGGCGTT AGCGTTTACG ATGACTTTGC CCATCACCCC
ACCGCGATTG CAACGACCAT TAAAGGTATG CGTGCTAAAG TCGGGCAGAC CAAAATCACT
ATCGTATTAG AGCCGCGCTC AAACACCATG AAGAGTGGTG TACACAAGGA CACGCTAGCT
CATTCAATGT TGCAAGCAGA CGAAGCCTTT TTATATCAAG CCGATACTAT CGATTGGAAT
ATGAAAGAGG CGATGGAAGC AGCGGTTATC CCTGTGACTG TATTGCATCA AATTGATGAT
GTTGTGGCTA AGGTAGCCGC TTCGGCAAAG CCGGGTGACA CTATCGTGGT GATGAGTAAC
GGTGGCTTTG GCGGGTTACA TAAAAAACTG TTGGCGGCAT TAGCAGTCAG CCCACAGCTT
GTAGAGCAGG CACACTGA
|
|---|
| Protein sequence | MHVHILGICG TFMGGLALLA RAKGHRVTGS DANVYPPMST QLEEQGIELI QGFDPSQLGD
AGSYPDIVVI GNAMSRGNPC VEAVLNLGIP YTSGPQFLVD HILPERWVLA VSGTHGKTST
SSMLAWILED CGYQPGFLIG GVPQNFGVSA RLGESAFFVV EADEYDSAFF DKRSKFVHYH
PRTLVINNLE FDHADIFADL AAIQKQFHHQ IRTVPGQGKV IWPADSHAVK QTIDMGCWSE
QETYHSSEVT KGWHAKALSD DCHEFEVFFD GQSQGVLDWA LIGQHNIENA VMAIAAARHV
GVAPSAAIDA LARFVPPKRR LELLDTVNGV SVYDDFAHHP TAIATTIKGM RAKVGQTKIT
IVLEPRSNTM KSGVHKDTLA HSMLQADEAF LYQADTIDWN MKEAMEAAVI PVTVLHQIDD
VVAKVAASAK PGDTIVVMSN GGFGGLHKKL LAALAVSPQL VEQAH
|
|---|
| |