Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3800 |
Symbol | |
ID | 1171444 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 3952311 |
End bp | 3955958 |
Gene Length | 3648 bp |
Protein Length | 1215 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637345569 |
Product | serine protease |
Protein accession | NP_719336 |
Protein GI | 24375293 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGAAGACAA AACTATCTCT CGCTATCTCC GCAGCACTGT TAACGAGTGC TGCTGTTGCA GGTACAACAG CTCAGTACAA TACAACCAAT CAAACAACTG ACAAGTATGC AGGCTTAAGC GTTACTAAAA ATGATAGTAA CGAGCAAAAA CAGGCTGTAG CTTGGATGGT AAAACTAAAA GCACCTTCTC TTGCGCAGCA AAGCCAGCTA AAAGGATTTA ATAAACAATC AGTAATGAGC CAAATAGAAA GCTCTCAAAC CAAGGTAAAA AACGCCATTA CCAGCATGGA TGCTGATTTA AAAATCGTTG CCACTACTTC AAAATTAGTC AACTCAATCA TTGTTGAAGG CAATCATAAA CAACTGGTTT CATTACTGAA CAATGCTGAA GTAGCGGATA TTCTGCCTAT CTATGACTAC AAGCTTGATG TAGCAGCCAG TGCTGAATAT ATCAAAGCAA AAGCGGTTAT TGATGCGGGT ATTGCCTCAG GTAAAGGCCA ACGAGTTGCC GTACTCGACA CAGGCGTTGA CTATACCCAC AAAGCCTTAG GTGGCTCAGG ATTAGTCGCT GACTATAAAG CTGCCGTCGC CGCAAAAAGC GAAATGCCAA ACTGGCCCCA AGGTAAAGTC ATTGGTGGCT GGGACTTTGT CAATAATGAT CCTAACCCAA TTGACGTTAC CACAAACCAC GGCACCCATG TGAGCCACTC AGTAGTTGGG ACGGCGCCTG ATGTAGAACT ACTTGTATAT TCAGTATGTA ACTCAGGCTG TTCTGGTATC GCTCAATTAA ACGCACTTGA AGCCTCTATG GATCCAAACG GTGATGGAGA CATCAGCGAT CGCGTCGACA CTGTTAACAT GTCATTAGGT GGCGACTTTG GTGATGTTGA AGATGGCGCC GTGCAAGTGA TGATCAACGA AATGGTGCAA CTGGGCGTCA ACCTTGTCAT CTCCGCAGGT AACGATGGTC CAACACCTTT TGTGGTCGGT GGCCCAAGTA CGACTAATAG TGCCCTTTCC GTTGGCGCAA TGACGCACCC AACCACAAAA GTTGGCAAAA TTGAAGCGTC TATTGCGGGT AATACAGTCA CAGCAGTTGG CGCTGGATTT AATAAATCCA ATGCATATAG CTTCACTAAT ACCGTTGCGC CGATTGTTTA CCCCGCAGCC AATAAAAATG GCTGCACTGC CTACACAGAA GATTTAACGG GTAAAACCGT TTTAATCGAT CGTGGAACTT GTGGATTCGT AGTTAAAGTT CTGAATGCTC AGTTAAAAGG AGCTTCATTT GTTATCGTAG CCAACAACGC AGCCAATGCT GGCGCGTTTG TGATGGGCGG AACCGACGAC AAGATCACCA TTCCTTCGGT AATGGTTTCT AAGGAAGATG GCGATGCAAT CAAAACCGCA CTCGCCTCGG GTGATGTCGC ATTTAGTATT GCATCGACTG AATTAGGTAC TGCTGGAGCC ATTGCGACCT TTACCTCAAG AGGCCCATCG ATTGGCGGAA CCTTAAAACC AGAGATTACC GCTCCTGGTA CTGATATCCT CACCGCACAC CCAGGATTAG GTGAAGGCTT AACTCCGATC AGCGGAACAT CCTTCTCAAG CCCAATTACG GCTGGTGCGG TAAGTATCAT TCGTGAAGCA TTACCTCATC GCAATGCATT TGAGGTAAAA GCGACCATCA TGAACGCTGC AAACCTTGAT GTGACGCTTG AGCCAAAAGA GATTAACCCA GATACAGAGC TAGCACCGAT TAGCTATATC GGTTCTGGTT TAGTCGACGT AGAAAAAGCC ATTAATCTGC CAGTTGCCGC TTGGAATAAA GACACCAAAC AAGCTGCGTT AGCCTTTGGC TTATTAGCGC TCAACAAAAC CACATCAATC ACCAAAACTG TCACCGTTAA AAACTTCTCT GCAACTGAAA AAACTTACAC CTTAAAAGTC GATCAACGTT TCCAAAACGA TCTTGATTCA GGCGCCTTAA GTTTTGCATT ACCCGCCAGT GTCACTATTC CTGCAGGACA AACGATCAAT TTTGATGTAA CGGCAACGAT TGACCCGACA AAATTACCAG AGTGGTCGCT AACATCATCC TATGAACTCG ATGGAACGGC AGCGGATGCA TCTGCGGCGC TGACACTTTC TGAATATGAT GGTGCCATCC AATTTATGGA GGGTGACGTA AAAGCGCTCC ATTTGGTGTA TCACGTACTA CCTAAAGCGG CTGCGGCAAT TTCAGTCGAA ACTGAAGTCA CCGAAGACGG CTTGGTACGA ACGCTCACTA ACGTTGGCGC GACGTCAATT ACCGATCCAT TTACAGCCCC ATTAATCGCG ACAAGCCCTG TAGATCAATC TAAACGTCAC GACCTGTTAA ATGCTTCTAG TGAGCTATTA CTTAGCAGCT CATGTGATAC TGGCATTGCA ATCTATAACA CCTTGCAAAT GCGTGACCCT ATCATTCATG CATTAGTGGC AAGTTATGAT GTAGATTATG ACCTCAACAA TGACGGTGTC TGGGACTACA CAGCAGCAAC AGTAAACTTA GACTGGTTTA GCACACGTGA CAATCCTTTA CCAAGATCTA TCTATGGTTT AGTGGCTAAA TACGGCACTT CATCAGGCAC CTTAGAGCCG GTGTTCCACG TCACAGGTAA TAACTTCCTT ACCAGTAAAG TGTGTTTAGA AGATATTGGT TTGGCTGAAG CTGACTTAGG TAAAACCATT AAAGTTCGTT ACCGTGTTGA AGATAGTGAT TGGGCACCGA TCCCCTCAGG TGATGAAGAC AGTGTTGTAG CTTCACTCGT ACTTGATGGA TCAGGAACGT CTGCAATGTT GCTGGATGCG AAAGGTAATG AAGTCACTGA ACTCAAACCT GGTGAAAGCG CCATTTTAGA AACTAAAGTT GGTAGTAATG CCAAAGGCTT TATGTTCTTG TCTGACTCAG GCTCTATGTC TGTCGTAGCA AACACAACAG ATGAAGGCAA CTCTGCACCA ACGGTAGAAA ATTTAACACT GTCAGTGAAT AAAGGAACGG CTGCAGGAAG CGTACTAGGT CAACTCAAGG CGACAGACCC AGATATGTTA ACGAGCCCAT TCTCTGAGTT TGTGACACTC AGCTCTAACA GCAGTATGGT CGTTATCGCT AAAGATGGAA CTGTCCGCTT AAGTGATAAT GCGGTAATCA ATCAACAAAG CAAAACAATA GAAGTTGAAG TGATTGCACT CGACACCATG GGCAACGCAT CGACTCCTGC GAAAGTCACT GTGTTGATTA ATAATACTAA GCCATCTGTT ACACCAACTA ATGCAAATGC TACCGAAAAT TCATATGTCG CATTACTTGC AAATGGTAAA GATGTTGATG GTGATGAACT CACTTACACA TGGACTCAAA CATCCGGTCC TTCAGTAAGT TTCGTCAACG GCAAAGATAG AATCGGGTTT ACCGCACCCG CTGGTGAAAA CGTTTACACC TTTACCGTTG TCGCCTCTGA TGGGGTTGAT AATAGTAATG TTGGCACATC TACTGTCACG GTAAAAACAG CGAAGTCTAA CAACGGTGGC GGCACATCTG GTGGTGCTCT TGGCTGGTTA ACTGCATTGT TATTACCTCT GGCAGCATTA CGTCGTCGTA TGAAGTAA
|
Protein sequence | MKTKLSLAIS AALLTSAAVA GTTAQYNTTN QTTDKYAGLS VTKNDSNEQK QAVAWMVKLK APSLAQQSQL KGFNKQSVMS QIESSQTKVK NAITSMDADL KIVATTSKLV NSIIVEGNHK QLVSLLNNAE VADILPIYDY KLDVAASAEY IKAKAVIDAG IASGKGQRVA VLDTGVDYTH KALGGSGLVA DYKAAVAAKS EMPNWPQGKV IGGWDFVNND PNPIDVTTNH GTHVSHSVVG TAPDVELLVY SVCNSGCSGI AQLNALEASM DPNGDGDISD RVDTVNMSLG GDFGDVEDGA VQVMINEMVQ LGVNLVISAG NDGPTPFVVG GPSTTNSALS VGAMTHPTTK VGKIEASIAG NTVTAVGAGF NKSNAYSFTN TVAPIVYPAA NKNGCTAYTE DLTGKTVLID RGTCGFVVKV LNAQLKGASF VIVANNAANA GAFVMGGTDD KITIPSVMVS KEDGDAIKTA LASGDVAFSI ASTELGTAGA IATFTSRGPS IGGTLKPEIT APGTDILTAH PGLGEGLTPI SGTSFSSPIT AGAVSIIREA LPHRNAFEVK ATIMNAANLD VTLEPKEINP DTELAPISYI GSGLVDVEKA INLPVAAWNK DTKQAALAFG LLALNKTTSI TKTVTVKNFS ATEKTYTLKV DQRFQNDLDS GALSFALPAS VTIPAGQTIN FDVTATIDPT KLPEWSLTSS YELDGTAADA SAALTLSEYD GAIQFMEGDV KALHLVYHVL PKAAAAISVE TEVTEDGLVR TLTNVGATSI TDPFTAPLIA TSPVDQSKRH DLLNASSELL LSSSCDTGIA IYNTLQMRDP IIHALVASYD VDYDLNNDGV WDYTAATVNL DWFSTRDNPL PRSIYGLVAK YGTSSGTLEP VFHVTGNNFL TSKVCLEDIG LAEADLGKTI KVRYRVEDSD WAPIPSGDED SVVASLVLDG SGTSAMLLDA KGNEVTELKP GESAILETKV GSNAKGFMFL SDSGSMSVVA NTTDEGNSAP TVENLTLSVN KGTAAGSVLG QLKATDPDML TSPFSEFVTL SSNSSMVVIA KDGTVRLSDN AVINQQSKTI EVEVIALDTM GNASTPAKVT VLINNTKPSV TPTNANATEN SYVALLANGK DVDGDELTYT WTQTSGPSVS FVNGKDRIGF TAPAGENVYT FTVVASDGVD NSNVGTSTVT VKTAKSNNGG GTSGGALGWL TALLLPLAAL RRRMK
|
| |