Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3780 |
Symbol | cydD |
ID | 1171427 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 3931073 |
End bp | 3933013 |
Gene Length | 1941 bp |
Protein Length | 646 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637345553 |
Product | cysteine/glutathione ABC transporter membrane/ATP-binding component |
Protein accession | NP_719317 |
Protein GI | 24375274 |
COG category | [C] Energy production and conversion [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components |
TIGRFAM ID | [TIGR02857] thiol reductant ABC exporter, CydD subunit |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATAAGT CGTTAGAAAA GTCCCTTCTC GTTTGGCTCA AGTCTCAAAA AAAGGCCTGT GGCTGGTTTC TTAAACTCTC GGTCTGGTGT GGAATATTAA GTGCTATTGC ATTGATCGTG CAGGCTTATT TAATTGCCAC TCTTCTCGAT GGTGTGATTA TTGGTAATGG ATTGCTCGGA TTCGGCGCCG ATAGCGCTCA GTCGACTATC GGCGCAAGTG ATTATCTGCC ACATCTTATG GCTCTGATTG GCTTAATGTT GCTGCGAGCA GGGCTAGCCT ATGCCCGTGA GCGCACCAGT TTTGAAGCGG GTAGGCGTTT GCGTCAACAT ATTCGCAGTG CAGTAATGGA TAAGTTAACT CGGCTTGGTC CTGCGTTTAT TAAAGGCAAA CCCGCTGGCA GTTGGGCAAG CATAGTGTTA GAGCAAGTTG AAGATTTACA AGACTTTTAT GCTCGTTATC TTCCGCAAAT GACGCTGGCG GGCGTGATCC CATTGCTGAT TTTGATCGCT GTTTTTCCTA TCAACTGGGC GGCGGGGTTA ATTTTACTGT TAACGGCCCC ATTAATTCCG CTGTTTATGA TTTTAGTTGG TATGGGCGCC GCCGATGCCA ATCGCAAAAA CTTCAATGCC TTAGCTCGAT TAAGTGGCCG TTTTATGGAC AGATTAAAAG GGCTTGCGAC CTTAAAGCTA TTCAATCGAG GCGATGCTGA GCTGAAGGTG ATCGAAAAGG CATCGGAGGA GTTTCGTAGC CGAACCATGT CGGTGCTGCG TATGGCCTTT TTAAGCTCGG CGGTGCTGGA GTTTTTTGCG GCGGTGTCGA TTGCGGTATT AGCGGTTTAC TTTGGTTTTA GTTACTTAGG TCACCTCGAT TTTGGCTACT ATGGCATGCA CGCCCATGTT GGGCCAAATG CTAATGAAGG ATTACCTTTT AGCCTGTTTG TCGGTTTGTT TATCCTCATT TTAGCGCCTG AGTTTTATCA GCCGTTAAGG GATATGGGCA CCCATTATCA CGCTAAAGCG CAGGCGATTG GGGCAGCGCA GGCCCTAATG ACGCTGCTTG AGCATCCCGA TCCTCAGCCA ACAGACTCAG TTGCGAGTGA TACCAGGCTT GATAAGATTG AAAGCATGCT CGCTCAAGAA CTTGAGGTCT TTAGCGTCGA TGGCAGCCGC TTATTAGGAC CCATCAGTTT TGAGCTAAAA CAGGGGGAAC ATTTAGCCTT AGTCGGCCCA AGTGGCGCAG GTAAAACCAG TTTACTCAAC GCGCTATTAG GATTTTTACC CTATCAAGGC AAGTTACTCA TTAATGGTGT TGAACTCTCA AGCATCGATC TTGCCCATTG GCGGCGCCAG TTAGCGTGGC TTGGACAGGA GCCACAGTTA TTCCATGGCA CAGTGCGGGA AAACGTAGCC CTAGCCAATC CTAATATCAC AGACGAGCAA GTGTGGCACT TGCTAGAGCA AGCCAATATC CATGAATTTG TGCGCACGCA ACCCCTTGGT TTAGCTACAG CTATCGGTGA ACAATCATCA ACCTTATCCG TCGGGCAGGC ACAACGTATT GCACTGGCGC GGGCACTAGC ACAGGCGTCG CAGGTGTTTA TCCTTGATGA ACCCTCCGCG AGTTTAGACA GTGTTAGTGA GCAGCTCCTC ACACTCACCT TGAACCGTGC GATGGCGGGC AAGATGTGCA TTATGGTGAC CCACAGATTA GATCAGCTCG ATCGCATGCA GTCGATCTTA GTCTTGGATA AGGGGTTGAT TGTCCAGCGA GGTGATTTTG CGACTCTCTC TGTGCAGGCA GGATTATTCC AAACCATGTT GCATGAAAAT ACCGAATCGG TGGCAGATAT TGAGTTAGCC GCTGTTGAGC CGCAGAGCCG TGTTGATATC CAGAGTGACT TAATACCAAC ATCCAATTCA ACCGAAGGAG CGGCGCAATG A
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Protein sequence | MDKSLEKSLL VWLKSQKKAC GWFLKLSVWC GILSAIALIV QAYLIATLLD GVIIGNGLLG FGADSAQSTI GASDYLPHLM ALIGLMLLRA GLAYARERTS FEAGRRLRQH IRSAVMDKLT RLGPAFIKGK PAGSWASIVL EQVEDLQDFY ARYLPQMTLA GVIPLLILIA VFPINWAAGL ILLLTAPLIP LFMILVGMGA ADANRKNFNA LARLSGRFMD RLKGLATLKL FNRGDAELKV IEKASEEFRS RTMSVLRMAF LSSAVLEFFA AVSIAVLAVY FGFSYLGHLD FGYYGMHAHV GPNANEGLPF SLFVGLFILI LAPEFYQPLR DMGTHYHAKA QAIGAAQALM TLLEHPDPQP TDSVASDTRL DKIESMLAQE LEVFSVDGSR LLGPISFELK QGEHLALVGP SGAGKTSLLN ALLGFLPYQG KLLINGVELS SIDLAHWRRQ LAWLGQEPQL FHGTVRENVA LANPNITDEQ VWHLLEQANI HEFVRTQPLG LATAIGEQSS TLSVGQAQRI ALARALAQAS QVFILDEPSA SLDSVSEQLL TLTLNRAMAG KMCIMVTHRL DQLDRMQSIL VLDKGLIVQR GDFATLSVQA GLFQTMLHEN TESVADIELA AVEPQSRVDI QSDLIPTSNS TEGAAQ
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