| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3774 |
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| Symbol | |
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| ID | 1171421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 3922299 |
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| End bp | 3925478 |
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| Gene Length | 3180 bp |
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| Protein Length | 1059 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637345547 |
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| Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
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| Protein accession | NP_719311 |
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| Protein GI | 24375268 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
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| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCAAAG CGAGTGAAGT GCTGGCAGGC CGCTACGATT CTGCCAATCT CGACGAACTG
TTCAAAGCTG TCACCGACAA CTACATTGTC GATGAAGAAC AATACTTGTC AGAGCTAATC
AAACTAGTCC CCTCCAGTGA TGAAGCGATT GAGCGCGTCA CTCGTCGTGC CCACGAACTG
GTGAACAAAG TTCGTCAATT TGAGAAAAAA GGCTTAATGG TTGGCATCGA TGCCTTCCTA
CAGCAATACA GCTTAGAGAC TCAGGAAGGT ATCATCCTGA TGTGTTTAGC CGAAGCCCTA
CTGCGTATTC CCGATGCGGC CACCGCTGAC GCCTTGATTG AAGATAAACT TTCAGGTGCA
AAATGGGATG AACACTTAAG CAAGAGCGAT TCGGTACTGG TTAACGCCTC CACTTGGGGC
CTGATGCTCA CCGGTAAAAT TGTCAGCTTA GATAAAAAAA TCGACGGCAG CTCAAGTAAC
CTATTAGGCC GTTTAGTCAA TCGTTTAGGT GAACCCGTGA TCCGCCAAGC CATGATGGCC
GCGATGAAAA TCATGGGTAA ACAGTTCGTT CTTGGCCGCA CCATGAAAGA AGCGCTTAAG
AACAGCGAAG ACAAGCGTAA ATTAGGTTAC ACCCACTCCT ACGATATGCT GGGCGAAGCC
GCGCTGACGC GTAAAGATGC CGAAAAATAC TTTACCGATT ATGCCAATGC GATTACCGAG
TTAGGCGCGC AAAGCTATAA CGAAAGTGAA TCTCCACGCC CAACGATTTC AATTAAGTTG
TCGGCATTGC ACCCACGTTA CGAAGTCGCT AACGAAGACC GTGTACTAAC CGAGCTGTAT
GACACCGTCA TTCGCCTAAT TAAACTCGCG CGCGGGTTAA ATATCGGTAT TTCTATCGAC
GCCGAAGAAG TTGACCGTCT CGAACTGTCA TTAAAGCTGT TCCAAAAACT GTTTAATTCT
GAAGCCACTA AAGGCTGGGG ATTACTGGGT ATCGTTGTTC AAGCTTACTC TAAGCGCGCG
CTACCTGTAC TGGTATGGTT AACCCGCCTA GCGAAAGAGC AAGGCGATGA AATCCCGGTT
CGCTTAGTCA AAGGCGCTTA CTGGGATAGC GAGCTTAAAT GGGCGCAGCA GGCAGGCGAA
GCCGCTTACC CACTTTACAC CCGCAAAGCA GGGACAGACG TATCTTACTT AGCCTGTGCG
CGTTACCTGT TATCCGACGC CACCCGCGGC GCGATTTACC CTCAATTTGC CAGCCACAAC
GCGCAAACCG TTGCGGCAAT TTCCGATATG GCGGGCGATC GTAACCACGA ATTCCAACGT
CTACACGGTA TGGGACAAGA GCTGTACGAC ACCATTCTGT CGGAAGCGGG CGCGAAAGCA
GTACGTATCT ACGCCCCCAT CGGTGCCCAT AAGGATCTGC TGCCCTACTT AGTACGTCGC
CTACTGGAAA ACGGTGCGAA CACCTCGTTC GTGCACAAAC TGGTCGATCC GAAAACGCCT
ATTGAGTCTT TAGTGGTTCA TCCGTTAAAG ACATTGACCA GCTACAAAAC CCTGGCTAAC
AACAAAATCG TTTTACCTAT CGATATTTTC GGTAGCGATC GCAAAAATTC CAAGGGACTC
AATATGAACA TTATTTCAGA AGCAGAGCCA TTCTTCGCGG CCTTAGACAA ATTCAAATCA
ACACAGTGGC AAGCGGGTCC TCTGGTTAAT GGTCAACCCT TAACTGGCGA GCACAAAACC
ATTGTTAGCC CATTCGATAC CACTCAAACT GTGGGTCAAG TGGCCTTTGC CGACAAAGCA
GCTATCGAAC AAGCCGTGTC TTCTGCTCAT GCGGCTTTCG GCTCTTGGAC CCGTACACCT
GTTGAAGTGC GCGCCTCGGC ACTGCAAAAG CTAGCGGATC TGTTAGAAGA AAACCGCGAA
GAACTGATTG CCCTCTGTAC CCGTGAAGCA GGTAAGAGCA TTCAAGACGG TATCGACGAA
GTGCGTGAAG CCGTCGACTT CTGCCGTTAC TACGCAGTAC AAGCCAAGAA GCTGATGTCA
AAACCTGAAC TGCTCCCAGG CCCAACAGGC GAGTTAAACG AACTCTTCCT CCAAGGTCGC
GGTGTATTTG TGTGTATCAG CCCATGGAAC TTCCCATTAG CGATCTTCTT AGGCCAAGTC
TCAGCGGCCC TAGCAGCGGG TAACACTGTG GTCGCAAAAC CTGCGGAACA GACGTCAATC
ATTGGTTACC GCGCAGTGCA GTTAGCACAC CAAGCGGGTA TTCCAACGGA CGTGCTGCAA
TATCTGCCAG GTACAGGCGC CACCGTTGGT AACGCACTGA CGGCTGATGA GCGCATTGGC
GGCGTATGCT TTACCGGTTC AACGGGCACA GCCAAACTGA TTAACCGCAC GCTGGCAAAC
CGTGAAGGCG CGATCATTCC GTTAATCGCC GAAACCGGTG GCCAAAACGC CATGGTGGTT
GATTCTACTT CTCAACCAGA ACAAGTGGTT AACGATGTAG TGTCTTCATC CTTCACCAGC
GCGGGTCAAC GCTGCTCGGC GCTGCGCGTA CTCTTCCTGC AGGAAGATAT TGCTGACCGC
GTTATTGATG TTCTGCAAGG TGCGATGGAT GAGCTAGTGA TTGGCAATCC AAGTTCAATC
AAAACTGACG TAGGTCCAGT GATTGATGCA ACAGCCAAAG CCAACCTTGA TGCCCATATC
GACCACATTA AGCAAGTTGG CAAGCTGATC AAGCAAATGT CTCTGCCAGC GGGCACTGAG
AATGGTCACT TTGTAGCGCC AACAGCCGTT GAAATTGATT CAATCAAAGT GCTTGAAAAA
GAACACTTTG GCCCAATCCT GCACGTGATC CGTTACAAAG CATCAGAACT TGCCCATGTG
ATCGATGAAA TCAACAGCAC AGGCTTTGGT TTAACCTTAG GTATCCACAG CCGTAACGAA
GGCCATGCCC TCGAAGTGGC GGATAAAGTG AATGTCGGCA ACGTGTACAT TAACCGTAAC
CAAATCGGCG CGGTGGTTGG AGTACAGCCT TTCGGCGGTC AAGGTCTATC TGGCACAGGT
CCAAAAGCCG GTGGTCCACA CTACTTAACC CGTTTCGTGA CTGAAAAAAC CCGCACTAAC
AACATCACCG CTATCGGTGG TAATGCGACC CTGCTGTCAC TCGGTGATAG CGACGCCTAA
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| Protein sequence | MFKASEVLAG RYDSANLDEL FKAVTDNYIV DEEQYLSELI KLVPSSDEAI ERVTRRAHEL
VNKVRQFEKK GLMVGIDAFL QQYSLETQEG IILMCLAEAL LRIPDAATAD ALIEDKLSGA
KWDEHLSKSD SVLVNASTWG LMLTGKIVSL DKKIDGSSSN LLGRLVNRLG EPVIRQAMMA
AMKIMGKQFV LGRTMKEALK NSEDKRKLGY THSYDMLGEA ALTRKDAEKY FTDYANAITE
LGAQSYNESE SPRPTISIKL SALHPRYEVA NEDRVLTELY DTVIRLIKLA RGLNIGISID
AEEVDRLELS LKLFQKLFNS EATKGWGLLG IVVQAYSKRA LPVLVWLTRL AKEQGDEIPV
RLVKGAYWDS ELKWAQQAGE AAYPLYTRKA GTDVSYLACA RYLLSDATRG AIYPQFASHN
AQTVAAISDM AGDRNHEFQR LHGMGQELYD TILSEAGAKA VRIYAPIGAH KDLLPYLVRR
LLENGANTSF VHKLVDPKTP IESLVVHPLK TLTSYKTLAN NKIVLPIDIF GSDRKNSKGL
NMNIISEAEP FFAALDKFKS TQWQAGPLVN GQPLTGEHKT IVSPFDTTQT VGQVAFADKA
AIEQAVSSAH AAFGSWTRTP VEVRASALQK LADLLEENRE ELIALCTREA GKSIQDGIDE
VREAVDFCRY YAVQAKKLMS KPELLPGPTG ELNELFLQGR GVFVCISPWN FPLAIFLGQV
SAALAAGNTV VAKPAEQTSI IGYRAVQLAH QAGIPTDVLQ YLPGTGATVG NALTADERIG
GVCFTGSTGT AKLINRTLAN REGAIIPLIA ETGGQNAMVV DSTSQPEQVV NDVVSSSFTS
AGQRCSALRV LFLQEDIADR VIDVLQGAMD ELVIGNPSSI KTDVGPVIDA TAKANLDAHI
DHIKQVGKLI KQMSLPAGTE NGHFVAPTAV EIDSIKVLEK EHFGPILHVI RYKASELAHV
IDEINSTGFG LTLGIHSRNE GHALEVADKV NVGNVYINRN QIGAVVGVQP FGGQGLSGTG
PKAGGPHYLT RFVTEKTRTN NITAIGGNAT LLSLGDSDA
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