Gene SO_3759 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3759 
Symbol 
ID1171407 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp3906314 
End bp3907288 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content43% 
IMG OID637345533 
ProductGGDEF domain-containing protein 
Protein accessionNP_719296 
Protein GI24375253 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain
[COG2203] FOG: GAF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAATTAC CTCCCATCCC TGATAATGAG TTGCAACGTT TATCCACCTT AAAGGCATTG 
AATATACTCG ATACCAATGC CGAAGAAAGG TTTGACCGTA TAACGCGGCT AACTCGGCGT 
ATTTTTGCGC TACCTATTTG TGTGGTGACG TTGGTGGATG CCAGTCGGCA ATGGTTTAAA 
TCCTGTCAAG GATTGGAGGT GACTGAGACA TCAAGGGATA TTTCCTTTTG TGGCCATGCT 
ATTAATCATG ATGGTATTTT TATTGTTAAC GATGCCCAAA TGGATCCCCG TTTTCACGAT 
AACCCTTTAG TCACTCAGTC TCCCCATATT CGTTTTTATG CTGGTTATCC TTTGACGATT 
CGTGGTGAAT ATCGGGTCGG AACTTTGTGC TTAATCGGTA ATGAGCCGAG GGAATTTAGC 
GCTGATGATA TCGAAACTCT CACTGATCTT GGGCAGATGG TTGAGGCGGA GTTGTTGTCT 
ATATCGCTAA ACACCTTAGA TCCCTTAACG ATGATTTCTA ATCGGCGTGG ATTTGAACAG 
CTTGCGTTTC AATCCCTTGC TAGTTGTCGA CGAACAAATT CTCAGGCTGC GTTAGTGTTT 
TTTGACCTCG ACTTTTTTAA GGAACTCAAT GATTCTTTTG GTCACCGTAA AGGCGATCAA 
GTGCTCTATG ATTTTGCCCA TCTCTTGATG GCGGCGTTTC GGGAATCCGA TGTGATTGCA 
AGACTGGGGG GCGATGAATT TGTGGTACTA CTAAGTTTTG TGAAGATAGA TGCAGTGCAT 
GTTGCGATTG AGCGTTTTCA GTCATTACTA GAGCAATATA ATCAACAGCA TCCACAGCAA 
CCTACCTTAG TGAGCAGTAT AGGTGTAGCT CATTGGTCGC CTGAATTGGA TATCAATCTT 
GAGGATTTAC TCGATGCTGC CGACAGGGCA ATGTATCAAG ATAAAGCCGA GCATCACTTA 
AATAAACCTG AATGA
 
Protein sequence
MQLPPIPDNE LQRLSTLKAL NILDTNAEER FDRITRLTRR IFALPICVVT LVDASRQWFK 
SCQGLEVTET SRDISFCGHA INHDGIFIVN DAQMDPRFHD NPLVTQSPHI RFYAGYPLTI 
RGEYRVGTLC LIGNEPREFS ADDIETLTDL GQMVEAELLS ISLNTLDPLT MISNRRGFEQ 
LAFQSLASCR RTNSQAALVF FDLDFFKELN DSFGHRKGDQ VLYDFAHLLM AAFRESDVIA 
RLGGDEFVVL LSFVKIDAVH VAIERFQSLL EQYNQQHPQQ PTLVSSIGVA HWSPELDINL 
EDLLDAADRA MYQDKAEHHL NKPE