Gene SO_3665 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3665 
Symbol 
ID1171322 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp3818216 
End bp3820003 
Gene Length1788 bp 
Protein Length595 aa 
Translation table11 
GC content52% 
IMG OID637345451 
ProductABC transporter, ATP-binding/permease protein, putative 
Protein accessionNP_719206 
Protein GI24375163 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID[TIGR02204] ABC transporter, permease/ATP-binding protein 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCTCAAC AATCTTCTTA CGCCTCGGTT AGCCAGCGGG CGGTGTTACC TTGGATTTGG 
CAATTTCTTA AGCCCTATCG CCCGCGGGTT GTCGCGGCGA TTGTATTCTT ATTGATCGGT
TCTTTGGCTT GGTTATCCCT CGGCCAAGGT GTGCGTTTGA TGGTGGACGA GGGGTTTATT
AAGGATAACG CCCAGCGCCT TAATGAGATC ATTCTGTTCG TACTGGTGAT TACTGCTGTG
AGTGGCACTG CGGTGTTCTG CCGCTTTTAT CTGATGACAT GGCTTGGGGA GCGTGTCAGT
GCCGATATTC GGCTTGCGGT TTACAATCAA TTACTTAAGT TATCTCCGGC GTTTTATGCC
AAGGTGCGTA CTGGCGAGGT GATTTCGCGT TTTACCGCCG ATTCCACTTT ACTGCAAACA
GTGGTCGGCT CGAGTCTTTC TATGGCACTG CGCTCCGGCG TGACGGTTAT TGGTGGGCTG
GCGATGATGG GAATCACCAG CGTGAAGATG ACACTACTGG TGCTACTGGC GGTACCTTTA
GTGCTTGGAC CGGTTAGTTT TTTTGGCAGA AAGGTGCGCA CCTTAGCGCG CGAGAGCCAA
GATAGGGTGG CGGATCTCGG TGCCTATGTG GATGAAACCT TGCATGAGAT CCACACAGTG
CAGGCCTATG GCCATGAGGA TAAGGACCGC AGTTTATTTA ACGGCCGTGT CGAAGATGTG
ATGACCGCCG CCAGCGGCCG CATTCGTTAC CGCGCGCTGC TGATTTCATC AGTGATGTTC
CTCAGTATTG CCGCTATTGC GCTAGTGACT TGGGTCGGCG CCCACGATGT GATGTCGGGT
AAGATGACGG GCGGCGAACT CTCAGCCTTT ATGTTTTATG CCGTGATGGT CGCTGGCGCG
GTTGCGACCA TTAGTGAAGT GGTGGGGGAA ATCCAACGCG CCTCGGGCGC CGCCGAACGT
TTAATCGAGT TGGCTGAGAC TGAGGTCGAT ATTCCGGCGC CGCTGGTGCC TAAAACTTTG
CCCACGAAAG TGCGTGGCGA GCTGCAATTA CATCAGCTGA ACTTCCATTA TCCCGAGCAA
ACTCAGTTAG TGCTCAGCGA CTTAAACCTT GTAATAAATG CCGGCGAGCG GGTGGCTTTG
GTCGGCCCGA GTGGTGCCGG TAAGAGTACC CTGTTTCAGT TATTGCAGCG GTTTTATGTG
CCTTCATCGG GCAGTATCTT ATTGGATGGG ATTGATATTG CTGCGCTTTC ACCACAGGAT
TTACGGGCAC AGTTTGCGCT GGTGCCGCAG GATTCGGTTA TTTTTGCCAC CAGTGTGCTG
GAAAACGTGC GCTATGGCCG CGTCGATGCT AGCGAGCAAG AAGTGATTGA TGCCTGTATT
GCAGCCCGAG CACATGAGTT TATCAGTGAA TTTAGCGAGG GATATCAAAC CTATTTGGGT
GAGCGTGGCG TGCGTTTATC TGGCGGGCAA AAACAACGGA TTGCCATTGC GAGGGCCATT
TTAGCCGACA GACCCATCCT ATTACTCGAT GAGGCCACCA GTGCACTCGA TGCCTTGAGT
GAGCAAAAAG TCAAACAGGC GCTCGATGAG TTAATGGCAG GTAAAACCAC GCTAATCATC
GCCCATCGGC TAGCCACCGT AATTAATGCG GATCGGATTA TTGTGTTTGA TAAGGGGCGA
ATCGTTGCCA GCGGCAAACA TCAAGATTTA ATTAAAACCA ATGCTTTATA CCGCGAGTTT
GCGACTCTGC AGCTATTGAC GGATGAGGCT ATGCCACTGA GTGATTAA
 
Protein sequence
MSQQSSYASV SQRAVLPWIW QFLKPYRPRV VAAIVFLLIG SLAWLSLGQG VRLMVDEGFI 
KDNAQRLNEI ILFVLVITAV SGTAVFCRFY LMTWLGERVS ADIRLAVYNQ LLKLSPAFYA
KVRTGEVISR FTADSTLLQT VVGSSLSMAL RSGVTVIGGL AMMGITSVKM TLLVLLAVPL
VLGPVSFFGR KVRTLARESQ DRVADLGAYV DETLHEIHTV QAYGHEDKDR SLFNGRVEDV
MTAASGRIRY RALLISSVMF LSIAAIALVT WVGAHDVMSG KMTGGELSAF MFYAVMVAGA
VATISEVVGE IQRASGAAER LIELAETEVD IPAPLVPKTL PTKVRGELQL HQLNFHYPEQ
TQLVLSDLNL VINAGERVAL VGPSGAGKST LFQLLQRFYV PSSGSILLDG IDIAALSPQD
LRAQFALVPQ DSVIFATSVL ENVRYGRVDA SEQEVIDACI AARAHEFISE FSEGYQTYLG
ERGVRLSGGQ KQRIAIARAI LADRPILLLD EATSALDALS EQKVKQALDE LMAGKTTLII
AHRLATVINA DRIIVFDKGR IVASGKHQDL IKTNALYREF ATLQLLTDEA MPLSD