Gene SO_3653 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3653 
SymbolispB 
ID1171312 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp3807924 
End bp3808895 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content47% 
IMG OID637345442 
Productoctaprenyl-diphosphate synthase 
Protein accessionNP_719195 
Protein GI24375152 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0142] Geranylgeranyl pyrophosphate synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATTTAA ACGCTATTCG TCAACTGGCT GACACTGATA TGCAAGCAGT CAATCAGCTG 
ATCTATAAAC AGCTGGAGTC AGATGTCGCC CTGATTAACC AGCTAGGTTT CTACATTATT
AATGGTGGTG GTAAACGTCT TCGTCCTTTA CTGTCCGTAC TCGCTGCTCG CGCAGTCGAC
TACCAAGGTG AAGCCCACCT CAAACTTGCC GCCATTATCG AATTTATTCA TACCGCCTCA
CTACTGCATG ATGATGTGGT CGATGAGTCA ACCCTAAGAC GCGGCCGCGA AACAGCAAAC
GCTCTTTTTG GTAACAGCGC CAGTGTATTA GTCGGCGACT TCCTTTATAC CCGCTCATTC
CAAATGATGA CTGAACTCGA TAGCATGCGC GTATTACGAG TATTAGCCGA TACCACCAAC
GTATTAGCAG AAGGTGAAGT ATTGCAGCTA ATGAACTGCA ATGATCCAGA TACGACTGAA
GAAAGCTATA TGCGGGTGAT TTACTGTAAG ACCGCGAAGC TATTCGAAGC GGCGACCTTA
CTTGCCGCAG TATTAGCTGG CGCCTCACCC GAGCAAGAAA CCGCATTAGG CGACTATGGT
AAGTATTTAG GCACCGCCTT CCAATTGACC GACGATTTAC TCGATTACAC CGCGGATAGC
GACGAGTTAG GTAAAAACAT CGGTGATGAC CTTGCTGAAG GTAAGCCAAC CTTACCGCTG
ATTTATGCTA TTGCCCACGG CACAGAGGAA GAAAAGCAGC TTATACGCCA AGCGATTGAG
CAAGGTGATG GCACTCATGC CATTGAGAAG ATAGTTGCCG CACTGCATCA TTGCGGCGCC
CTCAACTACA CTCAGCAAAA AGCAATTGAA GAATCAAATA AAGCCATTGC AGCGCTCTCG
GTATTACCCG ACAGTGATTT CAAAACCGCA TTAATTTCGC TGGCAAAAAT ATCTGTTGAT
CGCAACCACT AA
 
Protein sequence
MDLNAIRQLA DTDMQAVNQL IYKQLESDVA LINQLGFYII NGGGKRLRPL LSVLAARAVD 
YQGEAHLKLA AIIEFIHTAS LLHDDVVDES TLRRGRETAN ALFGNSASVL VGDFLYTRSF
QMMTELDSMR VLRVLADTTN VLAEGEVLQL MNCNDPDTTE ESYMRVIYCK TAKLFEAATL
LAAVLAGASP EQETALGDYG KYLGTAFQLT DDLLDYTADS DELGKNIGDD LAEGKPTLPL
IYAIAHGTEE EKQLIRQAIE QGDGTHAIEK IVAALHHCGA LNYTQQKAIE ESNKAIAALS
VLPDSDFKTA LISLAKISVD RNH