Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3653 |
Symbol | ispB |
ID | 1171312 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 3807924 |
End bp | 3808895 |
Gene Length | 972 bp |
Protein Length | 323 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637345442 |
Product | octaprenyl-diphosphate synthase |
Protein accession | NP_719195 |
Protein GI | 24375152 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATTTAA ACGCTATTCG TCAACTGGCT GACACTGATA TGCAAGCAGT CAATCAGCTG ATCTATAAAC AGCTGGAGTC AGATGTCGCC CTGATTAACC AGCTAGGTTT CTACATTATT AATGGTGGTG GTAAACGTCT TCGTCCTTTA CTGTCCGTAC TCGCTGCTCG CGCAGTCGAC TACCAAGGTG AAGCCCACCT CAAACTTGCC GCCATTATCG AATTTATTCA TACCGCCTCA CTACTGCATG ATGATGTGGT CGATGAGTCA ACCCTAAGAC GCGGCCGCGA AACAGCAAAC GCTCTTTTTG GTAACAGCGC CAGTGTATTA GTCGGCGACT TCCTTTATAC CCGCTCATTC CAAATGATGA CTGAACTCGA TAGCATGCGC GTATTACGAG TATTAGCCGA TACCACCAAC GTATTAGCAG AAGGTGAAGT ATTGCAGCTA ATGAACTGCA ATGATCCAGA TACGACTGAA GAAAGCTATA TGCGGGTGAT TTACTGTAAG ACCGCGAAGC TATTCGAAGC GGCGACCTTA CTTGCCGCAG TATTAGCTGG CGCCTCACCC GAGCAAGAAA CCGCATTAGG CGACTATGGT AAGTATTTAG GCACCGCCTT CCAATTGACC GACGATTTAC TCGATTACAC CGCGGATAGC GACGAGTTAG GTAAAAACAT CGGTGATGAC CTTGCTGAAG GTAAGCCAAC CTTACCGCTG ATTTATGCTA TTGCCCACGG CACAGAGGAA GAAAAGCAGC TTATACGCCA AGCGATTGAG CAAGGTGATG GCACTCATGC CATTGAGAAG ATAGTTGCCG CACTGCATCA TTGCGGCGCC CTCAACTACA CTCAGCAAAA AGCAATTGAA GAATCAAATA AAGCCATTGC AGCGCTCTCG GTATTACCCG ACAGTGATTT CAAAACCGCA TTAATTTCGC TGGCAAAAAT ATCTGTTGAT CGCAACCACT AA
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Protein sequence | MDLNAIRQLA DTDMQAVNQL IYKQLESDVA LINQLGFYII NGGGKRLRPL LSVLAARAVD YQGEAHLKLA AIIEFIHTAS LLHDDVVDES TLRRGRETAN ALFGNSASVL VGDFLYTRSF QMMTELDSMR VLRVLADTTN VLAEGEVLQL MNCNDPDTTE ESYMRVIYCK TAKLFEAATL LAAVLAGASP EQETALGDYG KYLGTAFQLT DDLLDYTADS DELGKNIGDD LAEGKPTLPL IYAIAHGTEE EKQLIRQAIE QGDGTHAIEK IVAALHHCGA LNYTQQKAIE ESNKAIAALS VLPDSDFKTA LISLAKISVD RNH
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