Gene SO_3638 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3638 
SymbolpdxA 
ID1171299 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp3797649 
End bp3798635 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content49% 
IMG OID637345429 
Product4-hydroxythreonine-4-phosphate dehydrogenase 
Protein accessionNP_719180 
Protein GI24375137 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1995] Pyridoxal phosphate biosynthesis protein 
TIGRFAM ID[TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGACCACTA AACGCATTGC CGTTACCCCC GGAGAACCAG CGGGTATCGG CCCCGATTTA 
GTCGTACAAC TGGCTCAGCA GGCTTGGCCT GCTGAGTTAG TTGTTTGTGC CGATCCCGAA 
TTATTAGCCA GCCGAGCTAA ACGACTGGGC CTGCATGTCA CTTTTCGCCC TTATTTGCCC 
GATCAAGCTC CAAGGCCTCA AGAGGCGGGC ACACTGACAA TCGCGCCTTT CAAATTGGTG 
ACGAACACCG TTTGTGGGCA ACTCGATGAG CAAAACAGTG CCTATGTGGT TGAAACCCTC 
CGTTATGCGG GTGAAAAAAA CATGAGCGGC GAGTTTGATG CTGTGGTCAC TGGCCCTGTG 
CACAAAGGGA TCATCAATCA AGCAGGGATT TCCTTTAGCG GCCATACTGA GTTTTTTGCC 
CATCAGGCAA ACTGCCCCGA TGTAGTGATG ATGCTAGCTA CCCAAGGTTT ACAGGTAGCA 
CTGGTAACAA CCCATATTCC ATTGGCCTAT GTGGCAAAAG CCATTACACG CCAGCGATTA 
CACCATATTA TCAAGATTTT ACACGCAGAC CTTATCAGTA AGTTTGCCAT TACTTCACCT 
AAGATTTATG TCTGTGGGTT AAATCCCCAT GCGGGTGAAG ATGGCCATTT AGGGCGGGAA 
GAAATCGATG TGATTATTCC AGCATTAAAT GAGCTTCGCG CTGAGTTTCA AATGAACATT 
GTCGGCCCGC TCCCCGCCGA TACCTTGTTC CAACCCAAAT ATTTACAGGA CGCGGATGTC 
GTCTTGGCCA TGTACCATGA CCAAGGTCTA CCCGTTCTAA AGTCACAGGG ATTTGGCAAA 
TCGGTAAACA TTACCTTAGG TTTACCCTAT ATCCGTACCT CGGTTGACCA TGGTACGGCG 
CTCGATCTTG CGGGAACGGG CAAAGCCGAT ATTGGCAGCT TTGTCTGCGC CTTGAATAAA 
GCCATTGAGT TATCCTCAAA AAACTAA
 
Protein sequence
MTTKRIAVTP GEPAGIGPDL VVQLAQQAWP AELVVCADPE LLASRAKRLG LHVTFRPYLP 
DQAPRPQEAG TLTIAPFKLV TNTVCGQLDE QNSAYVVETL RYAGEKNMSG EFDAVVTGPV 
HKGIINQAGI SFSGHTEFFA HQANCPDVVM MLATQGLQVA LVTTHIPLAY VAKAITRQRL 
HHIIKILHAD LISKFAITSP KIYVCGLNPH AGEDGHLGRE EIDVIIPALN ELRAEFQMNI 
VGPLPADTLF QPKYLQDADV VLAMYHDQGL PVLKSQGFGK SVNITLGLPY IRTSVDHGTA 
LDLAGTGKAD IGSFVCALNK AIELSSKN