Gene SO_3563 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3563 
Symbol 
ID1171234 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp3723892 
End bp3724515 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content44% 
IMG OID637345362 
ProductSM-20 domain-containing protein 
Protein accessionNP_719110 
Protein GI24375067 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3751] Predicted proline hydroxylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTTTCGC AATTGAGTGA ATCAGTGCTG GATGTGATCG CTGACGCCTT GGTGGATAAA 
GGCTATATCT TTTTACCCGA GTTAGTGCCT GCCCATATAA GCCAAGTTTT ATTGGAAAAA 
GTGCAAGCGA CAGAAATACA TGAGCTAAAA GCGGCCTCCA TCGGACGTGG TGCAGAACAA 
CAACTTAACC CCGATATTCG CCGTGATCGG ATCCAGTGGT TGGACGAGCA GCATGAGCCT 
GACTCGCTTT ATTTGGATTT GATGATGCAA TTAAAAGAGG GGCTCAATCG TCGCTTATTT 
ATGGGCTTGT TTGACTATGA AAGCCATTAT GCGGTGTACC AACCTGGTGC CTTCTATAAA 
AAGCATGTGG ATGCATTGAA AGGTAGCCAA AACCGTATTT TAACGACAGT CTTTTTCCTT 
AATCCTGACT GGATACCCGA ACATTGTGGT GAGTTAGTCA TTTTTGATGA AGATGATAAC 
GAGATTGAGC ACATCGCGCC AAAAATGGGG CACTTTGTGA TTTTCTTAAG TGAGCGTTTT 
CCCCATGAGG TGACAAAAAC CTTAGCTAAA CGCAACAGTA TTGCGGGTTG GTTTAGGGTG 
AGCAATAGCG TGCATGGCTT TTAA
 
Protein sequence
MVSQLSESVL DVIADALVDK GYIFLPELVP AHISQVLLEK VQATEIHELK AASIGRGAEQ 
QLNPDIRRDR IQWLDEQHEP DSLYLDLMMQ LKEGLNRRLF MGLFDYESHY AVYQPGAFYK 
KHVDALKGSQ NRILTTVFFL NPDWIPEHCG ELVIFDEDDN EIEHIAPKMG HFVIFLSERF 
PHEVTKTLAK RNSIAGWFRV SNSVHGF