Gene SO_3551 details

Gene Information

• Locus tag: SO_3551
• ID: 1171222
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 3707695
• End bp: 3708297
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637345350
• Product: RNA polymerase sigma-70 factor
• Protein accession: NP_719098
• Protein GI: 24375055
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCACTGG CGATACCGCA AATTCATGCC CATGAGCATA CCGATGAACA GTTAATGCAG 
CGCTATGCAA AGGGCGATGC CAAAGCGTTT GAGCAGCTTT ACCTTAAACA TAAAGGGGCG 
TTGTATCGCT ACTTTGTGCG CCAACTTGGG GATAAACAGC TAGCCGAAGA CTTATATCAA 
GAGACTTGGG GGCGGGTGAT CCGTGCTGCA GCGAGTTATG AGCCGAGCGC TAAGTTTAAT 
ACTTGGCTTT ATCGGATTGC CCATAACCTG TTGATTGATC ATGTAAGAGC GGTAAAGCCA 
GTCGATTTAG TGAGTCATGA TAATGGGGAA GGCCTCGATA CCTTCGCGGG GCAAGCGCAG 
TCGCAGCCGG ATGTACACTG GCTGGAGACA CAAAAAAGTC TCTTACTAAA AAATTGTGTA 
GCCCTATTAC CTCAAGTGCA GAAAGAAGCC TTTATTTTAA ATATCGAAAT GGGTTTTACC 
GCCGCAGTGA TCAGCGATAT TGCTGGTGTG ACGTTAGAGG CCACGAAGAG CCGCATTCGC 
TACGCCTATC AAAGCTTAAA AGATTGTGTC AATGCTAAAT GGCAGGAGGT TGGTCATGAG 
TAA 

 

Protein sequence

MALAIPQIHA HEHTDEQLMQ RYAKGDAKAF EQLYLKHKGA LYRYFVRQLG DKQLAEDLYQ 
ETWGRVIRAA ASYEPSAKFN TWLYRIAHNL LIDHVRAVKP VDLVSHDNGE GLDTFAGQAQ 
SQPDVHWLET QKSLLLKNCV ALLPQVQKEA FILNIEMGFT AAVISDIAGV TLEATKSRIR 
YAYQSLKDCV NAKWQEVGHE