Gene SO_3531 details

Gene Information

• Locus tag: SO_3531
• Symbol: lspA
• ID: 1171204
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 3685286
• End bp: 3685798
• Gene Length: 513 bp
• Protein Length: 170 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 637345332
• Product: lipoprotein signal peptidase
• Protein accession: NP_719078
• Protein GI: 24375035
• COG category: [M] Cell wall/membrane/envelope biogenesis; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0597] Lipoprotein signal peptidase
• TIGRFAM ID: [TIGR00077] lipoprotein signal peptidase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCATTAA CTTGGAAAGA CAGTGGCTTA CGTTGGTATT GGGTAGTTGT ATTGGTGTTT 
TTGGCCGATC AACTATCCAA ACAATGGGTC TTAGCCAATT TTGATTTGTT TGAATCGGTG 
CAGTTATTAC CTTTTTTTAA TTTCACCTAT GTCCGTAACT ATGGCGCAGC GTTTAGCTTT 
TTGAGTGAAG CCGGTGGCTG GCAACGTTGG TTGTTTACTA TCGTCGCAGT TGGATTTAGC 
TCCTTGCTGA CTGTTTGGTT GCGTAAGCAG TCGGCATCAT TATTGAAGTT AAATCTGGCC 
TACACCTTAG TGATTGGCGG GGCCTTAGGA AATCTGGTTG ATCGATTAAT GCATGGTTTT 
GTGGTGGATT TTATCGATTT TTATTGGGGA AAGAGCCATT ATCCTGCCTT TAATATTGCA 
GATTCTGCGA TTTTTATCGG TGCTGTACTG ATTATTTGGG ATTCGTTTTT TAACAGTCAA 
TCCGAACAAG ATAAAACCGA AGAGGTGAAG TAG 

 

Protein sequence

MPLTWKDSGL RWYWVVVLVF LADQLSKQWV LANFDLFESV QLLPFFNFTY VRNYGAAFSF 
LSEAGGWQRW LFTIVAVGFS SLLTVWLRKQ SASLLKLNLA YTLVIGGALG NLVDRLMHGF 
VVDFIDFYWG KSHYPAFNIA DSAIFIGAVL IIWDSFFNSQ SEQDKTEEVK