Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3525 |
Symbol | |
ID | 1171198 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 3678173 |
End bp | 3681679 |
Gene Length | 3507 bp |
Protein Length | 1168 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 637345326 |
Product | type IV pilin biogenesis protein, putative |
Protein accession | NP_719072 |
Protein GI | 24375029 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTAATCA AAAAACTCAC TTTTTGTACA TTGCTTGCAT TGGCTTCAAC GTCAATCTCA TCGTTTGGCG ATGATACAGA ACTGTATGTA AAAGAATCGT CGACACGCAC GGGGGCTAGG CCTAAAGTCT TGGTTATTTT TGATAACTCA GGAAGTATGT CTACCGAAGA AATTACCCAA GTGGTTGATT ATGATCCCGA TTATGATTAT CCCCCTTTAA GTGGCTCGGG TTACAGTGGC GACCGAATCT ATTACACCGT TGGTGGCGGT GCATTACCAA CGCCCGATAC TACTTCTGAT AGGCGATATT TTAATGCCAC TATAAATGGT TGTAACCAAA GTAAAGTTGC ATTGGATCAA TTTGGTCGTT TTACGGGTTA TATTCGCGAG TTCACCTCAA GCGGAACAAC GGGAGTATGG AAAGAATTTC CCGAGACCGA TGGTCGTAAC ATTAAGGTGG TTGATTGTTG GGAAGATATC TCAACAGTTG ATCCTCAAAA CTCATCTCCT TACTCTAACG GTTTCCCCGC TAATGGATTA ACGACAGGTT CAGGTAAAAA TAAGAAAGCG TTTCCATATA ATACTTCTTC ATCACCTGGA ACTACTTGGG CTAATGCGTT AGCTGCCGCC AAGAATACCG GCTTTGGTGT TGGTCAACCC GTCACTTTTT ATACAGACAA CTATTTGAGA TGGTATTGGT TATCAAAAGA AGGAAGATTG CCAACTATAA AAGTTCCTAG GATAGATATC GCGAAGAAAG CGATTTCTAA CATTATTAGA TCTACACCAA CTGTTGATTT TGGATTGGCT GTTTTTAATT ACAATTACCC TAATGAGGGT AATCGGGATG GAGGCAGGAT TGTTTCTGGT ATTACTCAAA TGACGGATAC CTCCCGAGCC AGTTTACTCT CAACTATTGA TGGTTTGCCT GCTAAAACAA ATACACCTTT GTGTGAGACT ATGTATGAAG CCTATCGTTA TTTTGCCGGC AAAGGTGTCG TTTTTGGACA CGCGGATACC GATTATGGCT CTTATGTAGG CAATCGTCCT CCATATGATA ATTCGGTAGA AACTAATGGT ACTTACGTTA GCCCATTTAA AGTTTGTACT GATATTGCCT ATGTGATTTA TGTTACCGAT GGCTCGCCAA CAGTTGATGG AAGTGCCAAT AACAATGTTA AAACTCTAAC CGCTGCGGCA AGTAAAAGCG GTAATTATTC TTCATTTTCT CAGGGATTAA GTACACCAAG TTATTTGCCT GCATTAGCAA GTTATATGTT TAATAATGAT TTGATTAACA AACCTGATAG TTCAAATACT GAGCAAATGC AAAATGTACG GACTTATACT ATTGGTTTTA GTAAAGGTGC TGATGATGCT GCGCCATTAT TAGCTGAAAC GGCTAAACGT GGCGGTGGAT TATATTTTGC TGCACAGAAT AGCTTAGAGC TACAAAATGC ACTTAATGAC GCCTTATCTA ATATTTTAAA TATAGACTCC AGTTTTACAT CTCCCAGTAT TGCTAGTAAT AACTTTGATA GAACTCAGAC CTTTGATGCC GCTTATTATG CGATGTTCTT ACCAGGAAAA GGGCCACGAT GGAGTGGAAA TCTTAAGAAA CTAAGAGTAA CAGCTGATGG CACTTTAGTT GATGGTGAAG GTAATGCAGC CATTGCTGAT AATGGTAATA TTAAAGAGAC TGCCTGTACG ATTTGGACTG ATTGTACAAG TCAAAAGGAT GGTAATAAAG TTGAGGTTGG TGGTGCAGCC GCGCAACTTA GAGGTCAGTT GAATCGTACT ATATTAAGTA ATTTGGCGGG GACGAGTAGT TTGTCGCCAC TTACATTATC AAATGCCCAG AATGCTGCTG GAGGAGAGCA AGCATTAGCG ACCTTCATGA GAACCGACAT TGATGAAGTG GCTAATACTT TAGACTGGCT TAAAGGTATT GATGTAGATG ATGATAATAA AAATGGAAGC ATTACAGATA AACGTAATGA TGTAATGGGC GATCCCTTAC ATTCGAAGCC TCTAGCATTG AATTTTGGTA GTGAAACGGC CACGGATATC CGAATTATTT TGGGCACAAA CCAAGGTGTT TTACATATGT TCAAAGATGC TGGTGAGTCA GTGTCAGAAA CATGGGGATT TATACCCTAT GAGCTTTTAC CAAATTTAAT CGAGCTTAGA ACGAATGACC CATCAGGAGT TCACACTGTA TATGGAATGG ATTCATCTCC CGTTGCTTAT ACCGAAACTG ATTCTACCGG TAAAGTAAAC AAGGCTTGGG TTTTTGTCGG TATGCAGCGT GGTGGTTCAT CTTATTATGC TTTAGATGTG TCTAATCCAG ACAGCCCCTC ACTTATGTGG ACTATTAATC CTTCTAGTGA TGGTTTTGTC GATCTAGGTC AGACATGGTC GGAGCCTATC GTGACTAAAA TCGTGGGTTA CGATAAACCA GTATTAATTT TTGGCGGTGG TTATGACGAG AGCTTTGATG CGACGCCGAC TACTTCGCCA CAAGGTCGCG CTATTTATAT TGTTGATGCA CAAAAGGGAA CGCTGATCCA TTCTTTTGGC GGTTCGGCTA GTGGGGCAAC AGTGCTTCCT GGTATCCAAG GCAGCATTCC TAATTCAGTG GCTGTATTAG ATAGTAACAA TGATGGTTAT ACTGACCGTA TCTATGCTTC TGATGTTACC GGTAATATAT GGCGTATGGA TTTACCTACA GCAAGTTCAG GTACGTGGAC CGCTTTTAAG TTTGCTTCAT TGGGTGGTTC AAATAGCGAT AATAGACGCT TCTTCGCAGA ACCCGTAGTT GCGCAAACAA TGTTTACCAA TTTGTCCGAA GTATCGGTGA CAACCGGAAC GGAAACTGTG ACAACTAAAA CACACCAAAA TGTTCCCTAT GATGCCGTTG CCGTGGGCAG TGGAATGAGG TCAAGTCCTT CAAGTACTAA CGTTAATGAT ATGTTTTTTA TGCTTCAGGA TCGTAACGTC GTCACTAAGA GTTTTACTGG AAGTAATGTA CCCGCGACCA TTACTATTAA TAATTTGTAT GATGTAACAT CAAGTGCCCC AACTTCAGAG ACGGATAATA TTAATTTCGG GACTAAATTT GGTTGGTTTT ATGATTTTTC GGGACTCGGT GAGAAAAGCT TGACGGCGGC ACTGATTGTT CAAGGAAAAG TATATTTTAC CTCCTATTCA CCGCCAGCTG ATTCTGTTGC TGATAACGTT TGTTTAGTTT CTGGTGCTGG CAAGCTTTAT GCGTTTGATT TACATAAAGG AACCAGATCT TTTTCTCAAT TATATTACGA ACTTGGAGAA AGAGTTCCTG ACACTCCGCA AATTGTGATC CCAGCCCCTG AAACGGGTAA AGATCCTTAT ATCTATATTA TTGGTGTCGG GAAAGGCGAT ATAAATGAAA ATGGTGAATA TAGTGGCACG ATAAACGTCG CTTCTGGTTT AGGTGTCAAT AAAATTTATT ACCATATAGA TGAATAA
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Protein sequence | MLIKKLTFCT LLALASTSIS SFGDDTELYV KESSTRTGAR PKVLVIFDNS GSMSTEEITQ VVDYDPDYDY PPLSGSGYSG DRIYYTVGGG ALPTPDTTSD RRYFNATING CNQSKVALDQ FGRFTGYIRE FTSSGTTGVW KEFPETDGRN IKVVDCWEDI STVDPQNSSP YSNGFPANGL TTGSGKNKKA FPYNTSSSPG TTWANALAAA KNTGFGVGQP VTFYTDNYLR WYWLSKEGRL PTIKVPRIDI AKKAISNIIR STPTVDFGLA VFNYNYPNEG NRDGGRIVSG ITQMTDTSRA SLLSTIDGLP AKTNTPLCET MYEAYRYFAG KGVVFGHADT DYGSYVGNRP PYDNSVETNG TYVSPFKVCT DIAYVIYVTD GSPTVDGSAN NNVKTLTAAA SKSGNYSSFS QGLSTPSYLP ALASYMFNND LINKPDSSNT EQMQNVRTYT IGFSKGADDA APLLAETAKR GGGLYFAAQN SLELQNALND ALSNILNIDS SFTSPSIASN NFDRTQTFDA AYYAMFLPGK GPRWSGNLKK LRVTADGTLV DGEGNAAIAD NGNIKETACT IWTDCTSQKD GNKVEVGGAA AQLRGQLNRT ILSNLAGTSS LSPLTLSNAQ NAAGGEQALA TFMRTDIDEV ANTLDWLKGI DVDDDNKNGS ITDKRNDVMG DPLHSKPLAL NFGSETATDI RIILGTNQGV LHMFKDAGES VSETWGFIPY ELLPNLIELR TNDPSGVHTV YGMDSSPVAY TETDSTGKVN KAWVFVGMQR GGSSYYALDV SNPDSPSLMW TINPSSDGFV DLGQTWSEPI VTKIVGYDKP VLIFGGGYDE SFDATPTTSP QGRAIYIVDA QKGTLIHSFG GSASGATVLP GIQGSIPNSV AVLDSNNDGY TDRIYASDVT GNIWRMDLPT ASSGTWTAFK FASLGGSNSD NRRFFAEPVV AQTMFTNLSE VSVTTGTETV TTKTHQNVPY DAVAVGSGMR SSPSSTNVND MFFMLQDRNV VTKSFTGSNV PATITINNLY DVTSSAPTSE TDNINFGTKF GWFYDFSGLG EKSLTAALIV QGKVYFTSYS PPADSVADNV CLVSGAGKLY AFDLHKGTRS FSQLYYELGE RVPDTPQIVI PAPETGKDPY IYIIGVGKGD INENGEYSGT INVASGLGVN KIYYHIDE
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