Gene SO_3521 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3521 
Symbol 
ID1171194 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp3675517 
End bp3676011 
Gene Length495 bp 
Protein Length164 aa 
Translation table11 
GC content40% 
IMG OID637345322 
Producttype IV pilus biogenesis protein, putative 
Protein accessionNP_719068 
Protein GI24375025 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4970] Tfp pilus assembly protein FimT 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTACTA TCTCAAAAGG TTTTACTTTG GTTGAACTGA TGGTTACCAT CGCGATTGCA 
GCTTTGCTCC TTTCTGTTGG CGTCCCATCA TTTACTGCAA TCTATGAAGC GACTCGCAGC 
GCAAATGAAA TGCAAAAAAT CAATGACCTC TTTGCCTTTG CTCGAAATCA AGCAGTGAAT 
TACGGTGCTA CTGTCACGGT ATGTCCCTAT GCAGCAACGC CCTGTGGTAA TGACTGGACT 
AAAGGGTTTA GTGTGTATAT TGAGAATAAT GGCGCGAAAA AAGTCCTTAA GGTAATAGAT 
GGGTTTAGCT CTAAAGACAC TATCTCATTA ACTGGCCCAA CTGATAAAAC CGTGAACTTT 
ACTCCTGATG GCTTAGTTTC TACTGAGACA TCAATTATAT ATTGTCCTAG CGGAGAAAGT 
GATGGTTCTA AAAGCATTAA AATTAGCACA TCAGGCTTGA TTAAAGAGGG AAGTGATAAT 
CAAAGCTGCT CATAA
 
Protein sequence
MFTISKGFTL VELMVTIAIA ALLLSVGVPS FTAIYEATRS ANEMQKINDL FAFARNQAVN 
YGATVTVCPY AATPCGNDWT KGFSVYIENN GAKKVLKVID GFSSKDTISL TGPTDKTVNF 
TPDGLVSTET SIIYCPSGES DGSKSIKIST SGLIKEGSDN QSCS