Gene SO_3514 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3514 
Symbol 
ID1171188 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp3667095 
End bp3669719 
Gene Length2625 bp 
Protein Length874 aa 
Translation table11 
GC content41% 
IMG OID637345316 
ProductTonB-dependent receptor 
Protein accessionNP_719061 
Protein GI24375018 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID[TIGR01782] TonB-dependent receptor 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGACCAT CATCCTTTAA GAAAAGTGTA CTAGCTACAA ACATTGCTAT TCTACTCGGC 
AGCGCTGTTT CAATCAGTGC TGTCGCTGCT GAGGCTGAAG CCACTGCAGC TGCTCCAGAA
AATATTGAAA AGATTGAAGT GCGTGGTATG CGTGCTTCAA TGAAAGCCTC TGTAAACGAT
AAACGTTTTT CTGACTCTGT GGTTGATGCT GTTACCGCTG AAGATATTGG TAAATTCCCT
GATGGTGATG TCGGTGAATC TTTAGCGCGT ATTCCCGGTG TTGCAGTCAA TCGTCAGTTT
GGCCAAGGAC AGCAAGTGTC TATCCGCGGT GCATCTAACC AATTGACTCG TACTTTATTA
AACGGCCATA CTGTTGCTTC GACTGGTTGG TTTGATCAAC AAGCGATTGA TCGTAGCTTT
AATTATAGTT TGCTACCGCC TGAACTTGTC GGGGGCATCT TAGTCAATAA ATCATCTCAA
GCAGATATTG CTGAAGGTGG TGTTGGCGGT ACTATTACAG TAAAAACCCG TAAGCCGCTT
GATTTAGAAG CAAATTCACT ATTCTTAAGC GCAAAAGGCG ATTATGGTAC TGTTTCTGAA
GAAATTGACC CGCAAACTTC AGGCTTATAT AGCTGGAAAG ACGACGATGA AAAATTCGGC
TTCTTATTGG CTGGTTCACT CGATAAAACC CAATACCAAC GTAACGGTAT TGAAACGCTA
TTAGGTTGGG GCGAAATCGT ACCAACTACG TTTCAACAAG ATCGTGAACG TACTGCAATT
AATGCTGCTT TCCAATATCG TCCAACCGAT GCGCTCGAGT TTGGTCTTAA TGTAATGAGT
CTGCAGCTTG ATGCCGATAA TGCCAATACT TCTATTTTCT TGTTCCCGAC TCAGCAAGGT
GAGAACAAGT GTATTCAGAA GAACGCTGCA GGCGTTTGTA CCCTAATAGA GCATACCGGT
AAAGGTGGTT TTGCGTGGGC ACAAACTTGG GCTCGTAAAG CCAGTATGTC TTCCGATACC
GTAGATTTAG ATTTTGCCTA TCAAGCTGAA GACTATAAGT TAGAAGGGCG CATTGGTAAA
ACGAAGGCTG AGGGCGGTAC TGATTTAACC TCAAACTATG GTCAGTCTAT TGGTAAACCT
GGTGATTTTG CCGGTATCTA TGATGCAACT GGTGATGTGA TTAAAATTGA TATTGCCAAT
AATTCTTTTG ATGCCAGTGA TTTTAATGAC AAGTTAGAAA CGGCGGGTTG GGCGCTTAAA
AAGCAACCTA ACACCGACGA AGAAGCGTTT GCGACTTTTG ATATTACTGT ACCAGTTGAA
TTTGGGGTCA TTACTTCAAT TAAATCAGGC CTAAGTTATG CTGATCATGA AGTGACTCAA
ACCACTGAAA AAGCAATAGT GTCTAATGTT ATGGCTAAGA ATGCCTCAGA ATACTATTCA
GGTACGATTT CATCGGGTGC AGGTTTTACC TTACCCAAGC CTATTTTTGA TAACATGATT
CGAGACGCCT ATGCTGCTAT TGATGGCTTT ACCTTAGATA AATCTGGTTA CGGTACGCTG
CAAGAGAAAA ACTTAGCGTT GTACACTATG GCTACATTTG CGGGTGAAGG TGTTCGCGGT
AACTTCGGCT TAAGATATAT CTCTACTGAT ATTGAATCAG ATTATTATGC GTTAAATAAT
AAAGGCGTTT ATGCCGATGA TTTAAGCACA GATAAAGCCA GTTATAATGA TGTGCTGCCA
AGTATGAACA TTGCCTTTGA TTTAGCAAGC GATGTGATAT TACGAGCATC GGCCGCGCAA
GTTATCTCTA GACCAAATTA TGCCGATTTA TTTGCAACTA ATAGATTGCC AGGTTTTGAT
GACGGCACGC CTAATAATGA AAAGAAAGTA ATAGGTAATG TGGCTTTATT ACCCTTTAAA
GCTTCTCAAG CAGATTTAGG TGTAGAATGG TATTTCAGTA GCGAAGGTTT GTTTGCTGCG
ACTTATTTTA TTAAAGATGT TAGTTCCTTT ATTTCTACCA AAGAGACATT AAAGCAACAA
ATCGGTATTG AAGATCCTAA CTTAATCAAG GAAGGCGTCA GTTCTTGTGG TGTTGGTGTC
TATGATTGTT GGACTGTGAC TGAATATTTT AACGCCACCG GTGGTTCAAT CGATGGTATT
GAATTGCAGT TACAAGATGC GTTTGATAAT GGTTTAGGTT ACTTAGTCAA TTATACTTTT
GCTGATGCAT CATCACCTGC TGAAAATTAC GCTGATCGTG TAGGTGTGTT CTCTGATTCA
TCTAAGCACA CTGTAAACTT AGTGGGCTAT TATGAAATGG ATGATTTTTC TGTCCGTGCG
GCCTATAACT GGCGCTCAGA ATATATGATG CGTGAATTAC CAGGTTTCTA CGGTAACCGC
GAACATCAAG CTTATGGCAC AGTAGATTTA AGCGCTAACT ACAATGTGAC TGATTATTTA
TCTGTCACAT TTGAAGTGGT GAATTTATTC GAAGAGGACA GCATCCAAAA AGGTGTAGCT
CCACTTGATG CCAAAGGCGT GATCAGTGAG TTTAAAGCCG ATTACCCTGT ATGGAGTTTT
GAGGGTGAGG CGCGTTATCA GCTTGGTATG GCGCTGCGCT TCTAA
 
Protein sequence
MRPSSFKKSV LATNIAILLG SAVSISAVAA EAEATAAAPE NIEKIEVRGM RASMKASVND 
KRFSDSVVDA VTAEDIGKFP DGDVGESLAR IPGVAVNRQF GQGQQVSIRG ASNQLTRTLL
NGHTVASTGW FDQQAIDRSF NYSLLPPELV GGILVNKSSQ ADIAEGGVGG TITVKTRKPL
DLEANSLFLS AKGDYGTVSE EIDPQTSGLY SWKDDDEKFG FLLAGSLDKT QYQRNGIETL
LGWGEIVPTT FQQDRERTAI NAAFQYRPTD ALEFGLNVMS LQLDADNANT SIFLFPTQQG
ENKCIQKNAA GVCTLIEHTG KGGFAWAQTW ARKASMSSDT VDLDFAYQAE DYKLEGRIGK
TKAEGGTDLT SNYGQSIGKP GDFAGIYDAT GDVIKIDIAN NSFDASDFND KLETAGWALK
KQPNTDEEAF ATFDITVPVE FGVITSIKSG LSYADHEVTQ TTEKAIVSNV MAKNASEYYS
GTISSGAGFT LPKPIFDNMI RDAYAAIDGF TLDKSGYGTL QEKNLALYTM ATFAGEGVRG
NFGLRYISTD IESDYYALNN KGVYADDLST DKASYNDVLP SMNIAFDLAS DVILRASAAQ
VISRPNYADL FATNRLPGFD DGTPNNEKKV IGNVALLPFK ASQADLGVEW YFSSEGLFAA
TYFIKDVSSF ISTKETLKQQ IGIEDPNLIK EGVSSCGVGV YDCWTVTEYF NATGGSIDGI
ELQLQDAFDN GLGYLVNYTF ADASSPAENY ADRVGVFSDS SKHTVNLVGY YEMDDFSVRA
AYNWRSEYMM RELPGFYGNR EHQAYGTVDL SANYNVTDYL SVTFEVVNLF EEDSIQKGVA
PLDAKGVISE FKADYPVWSF EGEARYQLGM ALRF