| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3514 |
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| Symbol | |
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| ID | 1171188 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 3667095 |
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| End bp | 3669719 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637345316 |
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| Product | TonB-dependent receptor |
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| Protein accession | NP_719061 |
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| Protein GI | 24375018 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGACCAT CATCCTTTAA GAAAAGTGTA CTAGCTACAA ACATTGCTAT TCTACTCGGC
AGCGCTGTTT CAATCAGTGC TGTCGCTGCT GAGGCTGAAG CCACTGCAGC TGCTCCAGAA
AATATTGAAA AGATTGAAGT GCGTGGTATG CGTGCTTCAA TGAAAGCCTC TGTAAACGAT
AAACGTTTTT CTGACTCTGT GGTTGATGCT GTTACCGCTG AAGATATTGG TAAATTCCCT
GATGGTGATG TCGGTGAATC TTTAGCGCGT ATTCCCGGTG TTGCAGTCAA TCGTCAGTTT
GGCCAAGGAC AGCAAGTGTC TATCCGCGGT GCATCTAACC AATTGACTCG TACTTTATTA
AACGGCCATA CTGTTGCTTC GACTGGTTGG TTTGATCAAC AAGCGATTGA TCGTAGCTTT
AATTATAGTT TGCTACCGCC TGAACTTGTC GGGGGCATCT TAGTCAATAA ATCATCTCAA
GCAGATATTG CTGAAGGTGG TGTTGGCGGT ACTATTACAG TAAAAACCCG TAAGCCGCTT
GATTTAGAAG CAAATTCACT ATTCTTAAGC GCAAAAGGCG ATTATGGTAC TGTTTCTGAA
GAAATTGACC CGCAAACTTC AGGCTTATAT AGCTGGAAAG ACGACGATGA AAAATTCGGC
TTCTTATTGG CTGGTTCACT CGATAAAACC CAATACCAAC GTAACGGTAT TGAAACGCTA
TTAGGTTGGG GCGAAATCGT ACCAACTACG TTTCAACAAG ATCGTGAACG TACTGCAATT
AATGCTGCTT TCCAATATCG TCCAACCGAT GCGCTCGAGT TTGGTCTTAA TGTAATGAGT
CTGCAGCTTG ATGCCGATAA TGCCAATACT TCTATTTTCT TGTTCCCGAC TCAGCAAGGT
GAGAACAAGT GTATTCAGAA GAACGCTGCA GGCGTTTGTA CCCTAATAGA GCATACCGGT
AAAGGTGGTT TTGCGTGGGC ACAAACTTGG GCTCGTAAAG CCAGTATGTC TTCCGATACC
GTAGATTTAG ATTTTGCCTA TCAAGCTGAA GACTATAAGT TAGAAGGGCG CATTGGTAAA
ACGAAGGCTG AGGGCGGTAC TGATTTAACC TCAAACTATG GTCAGTCTAT TGGTAAACCT
GGTGATTTTG CCGGTATCTA TGATGCAACT GGTGATGTGA TTAAAATTGA TATTGCCAAT
AATTCTTTTG ATGCCAGTGA TTTTAATGAC AAGTTAGAAA CGGCGGGTTG GGCGCTTAAA
AAGCAACCTA ACACCGACGA AGAAGCGTTT GCGACTTTTG ATATTACTGT ACCAGTTGAA
TTTGGGGTCA TTACTTCAAT TAAATCAGGC CTAAGTTATG CTGATCATGA AGTGACTCAA
ACCACTGAAA AAGCAATAGT GTCTAATGTT ATGGCTAAGA ATGCCTCAGA ATACTATTCA
GGTACGATTT CATCGGGTGC AGGTTTTACC TTACCCAAGC CTATTTTTGA TAACATGATT
CGAGACGCCT ATGCTGCTAT TGATGGCTTT ACCTTAGATA AATCTGGTTA CGGTACGCTG
CAAGAGAAAA ACTTAGCGTT GTACACTATG GCTACATTTG CGGGTGAAGG TGTTCGCGGT
AACTTCGGCT TAAGATATAT CTCTACTGAT ATTGAATCAG ATTATTATGC GTTAAATAAT
AAAGGCGTTT ATGCCGATGA TTTAAGCACA GATAAAGCCA GTTATAATGA TGTGCTGCCA
AGTATGAACA TTGCCTTTGA TTTAGCAAGC GATGTGATAT TACGAGCATC GGCCGCGCAA
GTTATCTCTA GACCAAATTA TGCCGATTTA TTTGCAACTA ATAGATTGCC AGGTTTTGAT
GACGGCACGC CTAATAATGA AAAGAAAGTA ATAGGTAATG TGGCTTTATT ACCCTTTAAA
GCTTCTCAAG CAGATTTAGG TGTAGAATGG TATTTCAGTA GCGAAGGTTT GTTTGCTGCG
ACTTATTTTA TTAAAGATGT TAGTTCCTTT ATTTCTACCA AAGAGACATT AAAGCAACAA
ATCGGTATTG AAGATCCTAA CTTAATCAAG GAAGGCGTCA GTTCTTGTGG TGTTGGTGTC
TATGATTGTT GGACTGTGAC TGAATATTTT AACGCCACCG GTGGTTCAAT CGATGGTATT
GAATTGCAGT TACAAGATGC GTTTGATAAT GGTTTAGGTT ACTTAGTCAA TTATACTTTT
GCTGATGCAT CATCACCTGC TGAAAATTAC GCTGATCGTG TAGGTGTGTT CTCTGATTCA
TCTAAGCACA CTGTAAACTT AGTGGGCTAT TATGAAATGG ATGATTTTTC TGTCCGTGCG
GCCTATAACT GGCGCTCAGA ATATATGATG CGTGAATTAC CAGGTTTCTA CGGTAACCGC
GAACATCAAG CTTATGGCAC AGTAGATTTA AGCGCTAACT ACAATGTGAC TGATTATTTA
TCTGTCACAT TTGAAGTGGT GAATTTATTC GAAGAGGACA GCATCCAAAA AGGTGTAGCT
CCACTTGATG CCAAAGGCGT GATCAGTGAG TTTAAAGCCG ATTACCCTGT ATGGAGTTTT
GAGGGTGAGG CGCGTTATCA GCTTGGTATG GCGCTGCGCT TCTAA
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| Protein sequence | MRPSSFKKSV LATNIAILLG SAVSISAVAA EAEATAAAPE NIEKIEVRGM RASMKASVND
KRFSDSVVDA VTAEDIGKFP DGDVGESLAR IPGVAVNRQF GQGQQVSIRG ASNQLTRTLL
NGHTVASTGW FDQQAIDRSF NYSLLPPELV GGILVNKSSQ ADIAEGGVGG TITVKTRKPL
DLEANSLFLS AKGDYGTVSE EIDPQTSGLY SWKDDDEKFG FLLAGSLDKT QYQRNGIETL
LGWGEIVPTT FQQDRERTAI NAAFQYRPTD ALEFGLNVMS LQLDADNANT SIFLFPTQQG
ENKCIQKNAA GVCTLIEHTG KGGFAWAQTW ARKASMSSDT VDLDFAYQAE DYKLEGRIGK
TKAEGGTDLT SNYGQSIGKP GDFAGIYDAT GDVIKIDIAN NSFDASDFND KLETAGWALK
KQPNTDEEAF ATFDITVPVE FGVITSIKSG LSYADHEVTQ TTEKAIVSNV MAKNASEYYS
GTISSGAGFT LPKPIFDNMI RDAYAAIDGF TLDKSGYGTL QEKNLALYTM ATFAGEGVRG
NFGLRYISTD IESDYYALNN KGVYADDLST DKASYNDVLP SMNIAFDLAS DVILRASAAQ
VISRPNYADL FATNRLPGFD DGTPNNEKKV IGNVALLPFK ASQADLGVEW YFSSEGLFAA
TYFIKDVSSF ISTKETLKQQ IGIEDPNLIK EGVSSCGVGV YDCWTVTEYF NATGGSIDGI
ELQLQDAFDN GLGYLVNYTF ADASSPAENY ADRVGVFSDS SKHTVNLVGY YEMDDFSVRA
AYNWRSEYMM RELPGFYGNR EHQAYGTVDL SANYNVTDYL SVTFEVVNLF EEDSIQKGVA
PLDAKGVISE FKADYPVWSF EGEARYQLGM ALRF
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