Gene SO_3494 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3494 
Symbol 
ID1171168 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp3644704 
End bp3645336 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content52% 
IMG OID637345298 
ProductTetR family transcriptional regulator 
Protein accessionNP_719043 
Protein GI24375000 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAGGAGCC CAATGATGTC AACCGTCCCC CAGACGCCCT GCGTAGGTCG CCCACGCGCC 
TTCGATGCCG ATGATGCATT GGCCAAAGCC TTGGAAGTCT TCTGGCGCAA AGGTTTTGAA 
GGTACATCGT TAACCGATCT AACTCAGGCC ATGGGCATCA ACAAACCTAG CCTTTATGCT 
GCTTTTGGTA ACAAAGAACA GCTATTCCTT AAAGCGATCG AGCTATACGA GCAGCGCCCC 
TGTGCGTTTT TCTATCCTTC ACTTGAAAAA GAAACCGCCT ATCAAGTGGT TGAGTCTATG 
TTACTTGGCG CAGCAACCTC CTTAGTGGAT GAAAACCAAC CTCATGGCTG CTTGATTGTC 
CAAGGCGCTC TCGCCTGTAG TGAAGCAGGA CAAGCCATTA AAGAAACACT GATCACCCGC 
CGCCGTGACG GTGAGCAAGC ATTATGCGAA CGCCTGCAAC GCGCAAAGGA TGAAGGCGAT 
TTACCCGCCG ACGCCGATCC CCTGCTACTC GCCAGATACG TAGGCACTGT ACTACAAGGC 
ATGGCCGTGC AAGCAACTAA TGGCATATGC CCGGGGGAAC TCCGTAAAGT CGCCGAGATA 
GTGTTAGCGA ATTTCCCCAA AAATAAAGGC TGA
 
Protein sequence
MRSPMMSTVP QTPCVGRPRA FDADDALAKA LEVFWRKGFE GTSLTDLTQA MGINKPSLYA 
AFGNKEQLFL KAIELYEQRP CAFFYPSLEK ETAYQVVESM LLGAATSLVD ENQPHGCLIV 
QGALACSEAG QAIKETLITR RRDGEQALCE RLQRAKDEGD LPADADPLLL ARYVGTVLQG 
MAVQATNGIC PGELRKVAEI VLANFPKNKG