| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3492 |
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| Symbol | mexF |
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| ID | 1171166 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 3639961 |
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| End bp | 3643104 |
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| Gene Length | 3144 bp |
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| Protein Length | 1047 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637345296 |
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| Product | RND multidrug efflux transporter MexF |
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| Protein accession | NP_719041 |
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| Protein GI | 24374998 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGTCGC AGTTTTTTAT TAAAAGACCG ATATTTGCAG CCGTGCTCTC GCTGCTATTT
TTTATCACCG GAGCGATTGC CGTTTGGCAA TTACCCATTA CTGAATACCC AGAAGTAGTG
CCGCCGACAG TGGTGGTGAC CGCCAACTAC CCTGGCGCGA ACCCTAAAGT CATTGCCGAA
ACGGTAGCCT CGCCCCTAGA GCAGGAAATC AATGGCGTCG AAGACATGCT GTATATGTCA
TCGCAGGCGA CGTCCGATGG ACGCATGACC TTGACCATCA CCTTTGCCAT TGGCACCGAT
GTGGACAGGG CGCAAACCCA AGTGCAGAGC CGAGTCGATC GCGCTATGCC ACGTTTGCCG
CAGGAGGTTC AACGCCTCGG GATTGTGACC GAAAAATCGT CGCCTGATTT AACCATGGTG
GTGCATTTAC TGTCGCCGGA TAACCGTTAT GACATGCTGT ATTTGTCTAA CTATGCGGCG
CTCAACGTAA AAGATGAGTT AGCACGCATC AAAGGCGTGG GCGCGGTGCG TTTATTCGGT
GCGGGCGAGT ACAGCCTGCG GATTTGGCTT GATCCGAATA AAGTCTCGGC GCTTGGCATG
TCACCATCGG ATATTATCGC TGCAGTACGA GAGCAAAATC AGCAAGCCGC TGCGGGCAGT
TTAGGAGCAC AGCCCAGTGG CAATGCCGAT TTCCAGTTGT TGATTAACGT TAAGGGGCGC
CTGACTGAAC TGTCAGAATT TGAAGACATT ATCATCAAGG TCGGACAAAA CGGTGAGGTG
ATCCGCTTGA AAGATGTGGC GCGAGTCGAA CTTGGTGCGA TCAGTTATGC GCTGCGTTCA
TTGCTGGATA ACAAGGATGC GGTGGCGATC CCGGTATTCC AAGCATCGGG CTCGAATGCG
ATTCAAATTT CCGACGATGT ACGCGCCGAA ATGGCAAGAC TAGCTAAGTC TTTCCCCGAA
GGCCTGCAAT ACGAGATTGT GTACGATCCA ACTGTGTTCG TGCGTGGCTC GATTGAAGCC
GTGGTCAAAA CCTTACTTGA AGCCGTGCTC TTAGTGGTAT TAGTGGTGGT GTTGTTCCTA
CAGACTTGGC GTGCCTCGAT TATTCCATTG GTGGCCGTGC CCGTTTCTTT GGTTGGTACC
TTTGCCTTTA TGCACTTGAT GGGCTTCTCG CTCAATGCGT TGTCACTGTT TGGTCTGGTG
CTGGCCATCG GGATTGTGGT CGACGATGCC ATTGTGGTGG TAGAAAACGT GGAGCGAAAT
ATTGCCTCGG GGTTAAGCCC GATTGCAGCG ACGCAAAAAG CCATGAAGGA AGTGACTGGG
CCGATTGTGG CAACCACCTT AGTGCTGGCC GCGGTCTTTA TTCCGACCGC CTTTATGAGT
GGATTAACGG GGCAGTTTTA TAAGCAGTTT GCGCTGACTA TCACTATTTC GACCTTTATT
TCGGCCATTA ACTCACTCAC CTTGAGTCCT GCGTTATCGG CGTTATTACT CAAAGGCCAT
GACGCGCCTA AGGATGCACT CACTCGGTTA ATGGATAAGC TGTTTGGTGG TTGGTTATTT
ACTCCTTTTA ATCGCTTATT CAACCGTGCA TCTGAAGGTT ATGGCTATTT AGTGCGTAAG
GTGATCCGTT TTGGCGGCAT TATCGGACTG GTGTATCTGG GCATGGTTGC GCTCACGGGC
GTGCAATTTG TGAATACCCC AACGGGCTAT GTGCCCGGCC AAGATAAACA GTATTTAGTG
GCATTTGCCC AATTACCGGA TGCGGCCTCA CTCGAGCGTA CCGATGTGGT GATCAAGAAA
ATGTCCGACA TCGCCTTGAA TCACCCCGGT GTGGCGCACT CTATTGCCTT CCCCGGCTTG
AGTATCAACG GTTTTACCAA TAGTCCTAAC TCGGGCGTGG TGTTTGTTGC GCTCGATGAT
TTTGAGTTAC GTAAGAGTCC TGAACTGTCG GCGAATGCGA TTGCCGGCCA ATTAAATCAG
CAATTTGCTG GTATTCAGGA TGCGTTTATT GCCATCTTCC CGCCGCCACC TGTGCAAGGC
CTCGGCACTA TTGGAGGGTT CCGTCTGCAA ATTCAAGACA GAGCTAACCT TGGTTATGAG
GCCTTGTATC AGGTGACCCA ACAAGTGATG TACAAGGCGT GGGCCGATCC ACAATTGGCG
GGGATTTTCT CCAGCTATCA AGTGAACGTG CCACAACTTG AACTGGATAT CGATCGGACT
AAAGCGAAAC AGCAGGCAGT GTCGCTCGAT CAAATTTTCC AGACATTACA AACCTATATG
GGCTCGACCT ATGTAAACGA TTTCAATCGT TTTGGTCGAA CCTATCAGGT GAATATGCAG
GCCGACGAAG CGTTCCGTCA AAGCCCGCAG CAGATCAGTC AGCTAAAAGT GCCTAATGTG
AATGGCGATA TGATCCCACT AGGCTCCTTT ATCAATGTGA GTCAGAGCGC GGGGCCCGAT
CGTGTGATGC ACTATAACGG TTTCACCACG GCTGAGATTA ACGGTGGCCC AGCACCGGGT
GTGAGTTCGG GCCAAGCACA GGCGGCGATT GAGAAAATCC TCGCCGAGAC CTTGCCCATA
GGCATGACCT ACGAGTGGAC TGAGCTGACC TATCAGCAGA TCCTCGCCGG TAACACTGGC
TTATTGGTGT TCCCGCTGGT GATTGTGCTG GTGTTTATGG TGCTCGCGGC GCAATACGAG
AGTTTAAGTT TACCATTGGC GATTATCTTA ATTATCCCAA TGACCTTACT CTCGGCGCTC
AGTGGTGTGC TTCTCTATGG TGGAGATAAT AATATTTTCA CCCAGATTGG TCTTATCGTC
CTCGTGGGCT TAGCGACGAA GAACGCGATT CTGATTGTCG AATTTGCCAA AGAGAAACAA
GACCATGGTA TGGAGGTTAT GGAGTCAATT CTTGAGGCGG CACGCTTAAG GCTGCGCCCC
ATCTTGATGA CTTCTATCGC CTTTATCATG GGAGTGGTGC CTATGGTGTT TTCGACGGGG
GCGGGCGCTG AGATGCGTCA GGCCATGGGA GTGGCGGTAT TTGCAGGTAT GATTGGAGTC
ACTATCTTTG GTCTCATTCT GACACCACTG TTTTACTACT CCTTAGTAAA ACGCGGCCGT
CGTAAGAGGA CGCTAGAGGT CTAA
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| Protein sequence | MLSQFFIKRP IFAAVLSLLF FITGAIAVWQ LPITEYPEVV PPTVVVTANY PGANPKVIAE
TVASPLEQEI NGVEDMLYMS SQATSDGRMT LTITFAIGTD VDRAQTQVQS RVDRAMPRLP
QEVQRLGIVT EKSSPDLTMV VHLLSPDNRY DMLYLSNYAA LNVKDELARI KGVGAVRLFG
AGEYSLRIWL DPNKVSALGM SPSDIIAAVR EQNQQAAAGS LGAQPSGNAD FQLLINVKGR
LTELSEFEDI IIKVGQNGEV IRLKDVARVE LGAISYALRS LLDNKDAVAI PVFQASGSNA
IQISDDVRAE MARLAKSFPE GLQYEIVYDP TVFVRGSIEA VVKTLLEAVL LVVLVVVLFL
QTWRASIIPL VAVPVSLVGT FAFMHLMGFS LNALSLFGLV LAIGIVVDDA IVVVENVERN
IASGLSPIAA TQKAMKEVTG PIVATTLVLA AVFIPTAFMS GLTGQFYKQF ALTITISTFI
SAINSLTLSP ALSALLLKGH DAPKDALTRL MDKLFGGWLF TPFNRLFNRA SEGYGYLVRK
VIRFGGIIGL VYLGMVALTG VQFVNTPTGY VPGQDKQYLV AFAQLPDAAS LERTDVVIKK
MSDIALNHPG VAHSIAFPGL SINGFTNSPN SGVVFVALDD FELRKSPELS ANAIAGQLNQ
QFAGIQDAFI AIFPPPPVQG LGTIGGFRLQ IQDRANLGYE ALYQVTQQVM YKAWADPQLA
GIFSSYQVNV PQLELDIDRT KAKQQAVSLD QIFQTLQTYM GSTYVNDFNR FGRTYQVNMQ
ADEAFRQSPQ QISQLKVPNV NGDMIPLGSF INVSQSAGPD RVMHYNGFTT AEINGGPAPG
VSSGQAQAAI EKILAETLPI GMTYEWTELT YQQILAGNTG LLVFPLVIVL VFMVLAAQYE
SLSLPLAIIL IIPMTLLSAL SGVLLYGGDN NIFTQIGLIV LVGLATKNAI LIVEFAKEKQ
DHGMEVMESI LEAARLRLRP ILMTSIAFIM GVVPMVFSTG AGAEMRQAMG VAVFAGMIGV
TIFGLILTPL FYYSLVKRGR RKRTLEV
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