Gene SO_3489 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3489 
Symbol 
ID1171163 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp3636795 
End bp3637733 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content43% 
IMG OID637345293 
ProductGGDEF domain-containing protein 
Protein accessionNP_719038 
Protein GI24374995 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGGCGAT TATTTCCTGA GGAGAGCGAA GCGTTATTAT TTAAGACGTT AAATTATATC 
CCCATTCCAA TTTTATTGTC TGAAGCACTT GCGGTTGAAG GTCGCAGGCC GAGTACGCAC 
AGAATTCATC GCTTTATGAA TCATGCTTTT GTTGAGCAAT TAGGCTACAA CTTAAGTGAA 
ATTCCCAATA TTGCTGCATG GTTTGATACT GTTTATCCCG ATCCTATTAT TAGAGAGCAA 
GCCATGCTTG AGTGGGATAG CGTCGTTTAT GAAAGTGAAC AGCAAGGGTT GAGTACTGCA 
GGCTTTAAAA CCTTTATTCG CTGCGGCACT GGCCAGTTCC GCTGGTTTTT AATTAATGCA 
CAATTGACCA CGGAAAACCA ATCCAATTTA AACATCGTTA CCATGAGAGA TGTGCATCAG 
TTACAGCTCT TGCTAGAAGA GAATGAGCGG CAATCAAAAA CCGATTTATT AACGGGCCTA 
GCTAATCGGC GGCAGATAGA GGATGTGCTC GCGGCGGCAA TGGCAAAAAG TGATCGCACC 
CAATCCTCTT TGTGTGTCGT GATGTGTGAT ATCGATTTTT TTAAGAATAT CAATGATAAC 
TTTGGTCACC TTTGTGGTGA TGACGTACTT AAAATAGTCG CGTCTCAATT GCAACATTCT 
GCCCAAGCTG CAACCTGTAT TGCCCGTTGG GGAGGAGAAG AGTTCTTGAT CGTTTTAGAA 
CACGTTGTTC CAGAATCTGC AGGCGTTCTT TGTGAACAAT TAAGGGGGCT GATAGCGGCA 
ACAGATTATC AATCCTATGG TCAACATATG CAATTAACGA TGAGTTTCGG CTGTGTGCAA 
TATCAAGCAA ATGAGAGTTT GCAAAGCCTA TTGTGTCGGG TTGATAAGGC ATTGTATCAA 
GCAAAAAACG GTGGCCGAAA TCAGGTTGTG ATGGATTGA
 
Protein sequence
MRRLFPEESE ALLFKTLNYI PIPILLSEAL AVEGRRPSTH RIHRFMNHAF VEQLGYNLSE 
IPNIAAWFDT VYPDPIIREQ AMLEWDSVVY ESEQQGLSTA GFKTFIRCGT GQFRWFLINA 
QLTTENQSNL NIVTMRDVHQ LQLLLEENER QSKTDLLTGL ANRRQIEDVL AAAMAKSDRT 
QSSLCVVMCD IDFFKNINDN FGHLCGDDVL KIVASQLQHS AQAATCIARW GGEEFLIVLE 
HVVPESAGVL CEQLRGLIAA TDYQSYGQHM QLTMSFGCVQ YQANESLQSL LCRVDKALYQ 
AKNGGRNQVV MD