| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3484 |
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| Symbol | |
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| ID | 1171159 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 3631033 |
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| End bp | 3634173 |
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| Gene Length | 3141 bp |
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| Protein Length | 1046 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637345289 |
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| Product | AcrB/AcrD/AcrF family protein |
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| Protein accession | NP_719033 |
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| Protein GI | 24374990 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGGCTGT CCGATGTCTC AGTTAAACGC CCCGTCGTTG CGATCGTTTT AAGCTTATTG
CTGTGCGTCT TTGGCTTAGT GTCCTTCACT AAACTTTCAG TACGGGAAAT GCCTGATGTT
GAAAGCCCTG TGGTGACTGT CAGCACCAGT TATTCCGGTG CGTCGGCTGC CATTATGGAA
AGCCAAATCA CTAAGACCCT CGAAGATGAA CTTACGGGGA TCAGCGGTAT CGATGAAATC
ACCTCCACTA CCCGCAATGG TAGCTCACGG ATCACGGTCA AATTCCTCCT CGGTTGGAAC
TTAACCGAAG GGGTGAGTGA TGTGCGTGAC GCAGTAGCTC GTGCCCAGCG CCGCCTACCT
GAAGACGCTA ACGATCCAGT GGTCTCCAAG GACAATGGTT CCGGCGAGCC GTCAGTGTAT
GTGAACCTAA GTTCAAGCGT GATGGACAGA ACCCAACTGA CCGATTATGC CCAGCGGGTA
TTAGAAGATA GATTCAGTCT GATCAGTGGT GTGAGCTCGA TTAGCATCTC TGGCGGTCTA
TACAAAGTCA TGTATGTCAA ACTCAGGCCC GAGCAAATGG CGGGGCGCAA CGTCACCGTC
ACCGATATTA CCAGCGCCCT GCGCAAAGAG AATATCGAAA CCCCAGGCGG CCAGGTACGT
AACGATACCA CAGTGATGTC GGTGCGCACC AAAAGGCTCT ATTACACCCC AAAGGATTTT
GATTATTTAG TCGTTCGTAC TGCCAGCGAC GGTACGCCTA TCTATTTGAA AGATGTGGCC
GATGTGGCCG TAGGCGCACA GAACGAAAAC TCCACCTTTA AGAGCGATGG TATTGTTAAC
CTAAGTCTAG GGGTGATCAC TCAATCCGAT GCTAACCCCT TAGTCGTTGC ACAGGAAGTA
CATAAAGAAG TCGATAAAAT TCAAGACTTT TTACCCGAAG GCACCAGCCT TGTGGTCGAC
TTTGACTCCA CCGTCTTTAT TGACCGCTCG ATCAATGAGG TTTACAACAC CCTCTATGTC
ACTGGCGCGC TCGTGGTGTT AGTGCTGTAT ATTTTTATCG GTCAAGTAAG GGCAACGCTT
ATCCCTGCGG TGACAGTCCC GGTGTCTCTG ATCTCGGCCT TTATCGCCGC CAATATGTTT
GGCTACTCGA TTAACCTATT AACCTTAATG GCATTAATCC TTGCCATTGG TCTAGTGGTC
GATGATGCCA TTGTGGTGGT CGAAAACATT TTCCACCATA TCGAAAAAGG TGAAGAGCCG
CTGCTTGCGG CTTACAAAGG CACACGGGAA GTCGGTTTTG CGGTCGTGGC AACCACCGCA
GTGTTAGTCA TGGTGTTCCT GCCTATTTCC TTTATGGAGG GTATGGTCGG TTTACTCTTT
ACCGAGTTTT CCGTGATGCT AGCTGTATCG GTACTGTTCT CTTCCCTCAT TGCCCTCACA
CTAACACCTG TACTGAGCAG CAAACTGCTA AAAGCCAATG TTAAACCAAA CCGTTTCAAT
CGCTTTGTCG ATCGTGGTTT TGCTCGAATG GAAAAGCTTT ACCATGTCGG TGTGACCCAT
GCGATCCGCT TTAGATTACT GGCGCCACTG GTTATTCTTG CCTGTATTGG CGGTAGCGTA
TGGTTAATGC AGCAAGTCCC CGCGCAATTA GCGCCGCAGG AAGACCGCGG TGTACTCTAT
GCCTTTGTGA AAGGCGCCGA GGGCACTAGC TATAACCGTA TGACGGCGAA CATGGATATC
GTCGAAGACA GATTAATGCC ACTCCTTGGC CAAGGTGTAT TGCGGTCTTT CAGTGTGCAA
GCCCCTGCCT TTGGTGGTCG TGCTGGCGAT CAAACCGGCT ATGTAATTAT GCAGCTAGAG
GATTGGGAAC ATCGCAATGT CACGGCGCAA CAGGCGTTAG GTATTATTAG CAAGGCATTG
AAAGATATTC CCGATGTAAT GGTTCGTCCT ATGATGCCAG GCTTTAGGGG CCAATCGAGT
GAGCCAGTAC AATTTGTACT GGGTGGCTCT GATTATGCCG AACTCTTTAA ATGGGCACAG
GTGTTAAAAG AGCAAGCCAA TGCCAGCCCG ATGATGGAAG GCGCCGATCT GGATTACGCC
GAAACCACAC CGGAACTGAT TGTCACCGTT GATAAAGAGC GTGCCGCAGA ACTAGGGATC
AGCGTCGATG ACGTCTCCCA AACCTTAGAA GTCATGCTCG GCGGGCGCAA AGAAACCACC
TATGTGGATC GCGGCGAAGA GTACGATGTG TATCTGCGCG GTGATGAAAA CAGCTTTAAC
AACGTTGGAG ATTTAAGCCA AATCTATATG CGTTCGGCCA AGGGCGAATT AGTCACGCTC
GATACGGTCA CCCATATCGA AGAAGTGGCC TCGGCGCAAA GATTGAGCCA CACCAATAAA
CAAAAATCCA TCACCCTTAA GGCTAACATC AGTAAAGGTT ACACCTTAGG CGAGGCCTTA
ACGTTCTTGG AAAACAAGTC CATAGAGTTG TTACCCAAGG ATATTTCCAT CGGCTATACC
GGTGAATCTA AGGACTTTAA AGAAAACCAA AGCAGCATTT TTATTGTGTT CGGTTTAGCG
CTACTGGTAG CTTACTTAGT ACTCGCTGCG CAATTTGAAA GCTTTATCAA CCCCTTAGTG
GTGATGTTTA CTGTGCCAAT GGGGGTATTT GGTGGTTTCC TCGGCCTGTT GGTAACCAGT
CAAGGTATTA ACATCTATAG TCAGATCGGC ATGATCATGT TGATTGGCAT GGTGACCAAA
AATGGGATCT TAATCGTCGA GTTTGCCAAC CAATTGCGTG ACCGAGGTTT GGCCCTAGAC
AAAGCCATTA TCGACGCCTC GACCCGCCGC TTACGCCCGA TTTTGATGAC GGCCTTCACC
ACTTTAGTCG GCGCGATACC GCTGATTTTC TCAACGGGCG CAGGCTCTGA AAGCCGGATT
GCCGTGGGGA CTGTGGTGTT TTTCGGCATG GCCTTTGCGA CCTTTGTAAC CCTGTTCGTC
ATCCCGGCAA TGTACCGTTT AATCTCGGCC GCCACCCATT CACCGGGTTA TGTTGAAGCG
AAACTCGAAG CGGCCATAAA AGCTCAAGAG CTCGCAGCAC AAGAGGCAGC CAAACAGCAG
GAGCAAACGG CAAAAGCTTG A
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| Protein sequence | MWLSDVSVKR PVVAIVLSLL LCVFGLVSFT KLSVREMPDV ESPVVTVSTS YSGASAAIME
SQITKTLEDE LTGISGIDEI TSTTRNGSSR ITVKFLLGWN LTEGVSDVRD AVARAQRRLP
EDANDPVVSK DNGSGEPSVY VNLSSSVMDR TQLTDYAQRV LEDRFSLISG VSSISISGGL
YKVMYVKLRP EQMAGRNVTV TDITSALRKE NIETPGGQVR NDTTVMSVRT KRLYYTPKDF
DYLVVRTASD GTPIYLKDVA DVAVGAQNEN STFKSDGIVN LSLGVITQSD ANPLVVAQEV
HKEVDKIQDF LPEGTSLVVD FDSTVFIDRS INEVYNTLYV TGALVVLVLY IFIGQVRATL
IPAVTVPVSL ISAFIAANMF GYSINLLTLM ALILAIGLVV DDAIVVVENI FHHIEKGEEP
LLAAYKGTRE VGFAVVATTA VLVMVFLPIS FMEGMVGLLF TEFSVMLAVS VLFSSLIALT
LTPVLSSKLL KANVKPNRFN RFVDRGFARM EKLYHVGVTH AIRFRLLAPL VILACIGGSV
WLMQQVPAQL APQEDRGVLY AFVKGAEGTS YNRMTANMDI VEDRLMPLLG QGVLRSFSVQ
APAFGGRAGD QTGYVIMQLE DWEHRNVTAQ QALGIISKAL KDIPDVMVRP MMPGFRGQSS
EPVQFVLGGS DYAELFKWAQ VLKEQANASP MMEGADLDYA ETTPELIVTV DKERAAELGI
SVDDVSQTLE VMLGGRKETT YVDRGEEYDV YLRGDENSFN NVGDLSQIYM RSAKGELVTL
DTVTHIEEVA SAQRLSHTNK QKSITLKANI SKGYTLGEAL TFLENKSIEL LPKDISIGYT
GESKDFKENQ SSIFIVFGLA LLVAYLVLAA QFESFINPLV VMFTVPMGVF GGFLGLLVTS
QGINIYSQIG MIMLIGMVTK NGILIVEFAN QLRDRGLALD KAIIDASTRR LRPILMTAFT
TLVGAIPLIF STGAGSESRI AVGTVVFFGM AFATFVTLFV IPAMYRLISA ATHSPGYVEA
KLEAAIKAQE LAAQEAAKQQ EQTAKA
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