Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3483 |
Symbol | |
ID | 1171158 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 3629924 |
End bp | 3631033 |
Gene Length | 1110 bp |
Protein Length | 369 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637345288 |
Product | HlyD family secretion protein |
Protein accession | NP_719032 |
Protein GI | 24374989 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAA CCATAATAGC CATTGCCTTA ATTGCTACGG TTGCTACTGC TGTGAGCTTT AGTGATGTAC TGCAAGCGGC CAAACCTGAA AGCGCTCCCC AACCTATGCG CACCGTACCC GTGGTAACAG GGGAAGTCGT TGAGCACCCA CTGGCACAAT CTGTTTCGTT GATTGGTAAA TTGGCCGCCG ATCGCGCGGT CGTCATTGCG CCGCAAGTCA CAGGCAAAAT TAAGCAAATT GCTGTAGTGT CAAATCAAGC GGTGAAAAAA GGTCAGCTCC TTATCGAGCT CGATGATATG AAAGCGCAAG CCGCCGTTGC CGAAGCCAAT GCTTTTTTAA ATGATGAAAC CCGTAAACTC AAAGAGTTTG AAAAACTCAT CAGCCGTAAT GCAATTACTC AGACGGAAAT CGATGCTCAA AAAGCCAGTG TCGATATTGC TAGGGCTCGT CTAGCCTCTG CACAAGCGGA TTTACATTAC CATTCCCTTA TCGCACCTTT TGCCGGACAA ACCGGCCTGA TCAACTTCAG CGAAGGTAAA ATGGTCAGCA CGGGTAATGA GTTGATGACA TTGGATGACT TGTCTAGCAT GCGACTCGAC TTACAAGTGC CAGAGCATTT TCTGTCTCAA ATCAGCATAG GTATGCCCGT ATCGTCCACC AGCCGTGCAT GGCCGGGGGA AACCTTTATC GGCAAAGTGG TTGCCATCGA TCCCCGCGTG AATGAAGAAA CCTTAAACCT GAAGATCCGC GTGCAATTTG AAAACACCGA TAATCGCTTA AAACCCGGTA TGATGATGTC ATCCACCATC ACCTTCCCGC CAATTTCAGC CCCGATTGTG CCAGTGCAAG CCTTAGAATA TTCAGGCACT AAACGCTATG TCTATGTGGT TGGAGAGGAT CATATTGCCC ATCGCACAGA AGTGATTTTA GGGGCGCGGG TGGGCGATCA AGTGCTCATC GATAGCGGTC TTAAGATTGG CGATAAAGTG GTGGTTCAAG GGCTTGTAAA TATGCGCGAT GGCTTAAAAA TAAATGAAGT CGCTCTTGAA GCTAAAAATA GTAATAACCG CCCAGCCAAG TCAGACGTCA ACACTGCGGA GACGAAATAA
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Protein sequence | MKKTIIAIAL IATVATAVSF SDVLQAAKPE SAPQPMRTVP VVTGEVVEHP LAQSVSLIGK LAADRAVVIA PQVTGKIKQI AVVSNQAVKK GQLLIELDDM KAQAAVAEAN AFLNDETRKL KEFEKLISRN AITQTEIDAQ KASVDIARAR LASAQADLHY HSLIAPFAGQ TGLINFSEGK MVSTGNELMT LDDLSSMRLD LQVPEHFLSQ ISIGMPVSST SRAWPGETFI GKVVAIDPRV NEETLNLKIR VQFENTDNRL KPGMMMSSTI TFPPISAPIV PVQALEYSGT KRYVYVVGED HIAHRTEVIL GARVGDQVLI DSGLKIGDKV VVQGLVNMRD GLKINEVALE AKNSNNRPAK SDVNTAETK
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