Gene SO_3478 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3478 
Symbol 
ID1171154 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp3624614 
End bp3625372 
Gene Length759 bp 
Protein Length252 aa 
Translation table11 
GC content43% 
IMG OID637345284 
ProductISSod6, transposase 
Protein accessionNP_719027 
Protein GI24374984 
COG category[L] Replication, recombination and repair 
COG ID[COG3293] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAAGAC TTATGCTAAC CGATGCACGC TGGGAAAAGC TATTTCATTT AATGAAAAGC 
ACAGGCCGTG TTTATGACAA ACCTGAACAT AGACAAACAT TCGAAGGTAT TCTTTACCGC
CTTAGAACAG GTATCCCTTG GCGAGATTTA CCTAAAGAGT TCGGTCATTG GAGCACGGTC
TTTAGACGGT TTCATTTATG GTCTAAGAAA GGCGTTCTAG CACATTTATT CAAGGCCTTA
GCCAACCTTG CTGATATAGA ATGGGTCTTT ATTGATGGCT CGATAGTGCG AGCTCACCAG
CACAGTGCAG GTGCAGCGAC GCTAAGTAAT GAGAGTATTG GTAAAAGTCG AGGCGGTAAT
TCAACCAAAA TTCACTTAGC CGTCGACAGC GGAGGATTAC CGATTTATTT CGAATTATCA
GAAGGCCAAA AACACGATAT TACACACGCC CCCAGCTTAA TTGAGCACCT GAAGCAGGTT
GATACCGTCA TTGCAGATAA AGGTTATGAC AGCGATGCTT TTCGTGAACT TATCGCCAAT
AAAGGCGGGA AATCTGTTAT TCCAAGGCGC CGCTATAAGA ATACACCTCA AGAAAGAGTC
GATTGGTGCT TATATCGGTA TCGACATTTA GTGGAGAATG CTTTTGGAAG AATAAAACAC
TATCGAGCAA TATCAACAAG ATATGACAAG CTAGCAAGAA ATTACGCCAG TATGGTGTCA
CTGGCGTTTA TGTTAATGTG GTTGCCGATG TATTGCTGA
 
Protein sequence
MPRLMLTDAR WEKLFHLMKS TGRVYDKPEH RQTFEGILYR LRTGIPWRDL PKEFGHWSTV 
FRRFHLWSKK GVLAHLFKAL ANLADIEWVF IDGSIVRAHQ HSAGAATLSN ESIGKSRGGN
STKIHLAVDS GGLPIYFELS EGQKHDITHA PSLIEHLKQV DTVIADKGYD SDAFRELIAN
KGGKSVIPRR RYKNTPQERV DWCLYRYRHL VENAFGRIKH YRAISTRYDK LARNYASMVS
LAFMLMWLPM YC