| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3477 |
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| Symbol | |
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| ID | 1171153 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 3622553 |
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| End bp | 3624343 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637345283 |
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| Product | pilin biogenesis protein-related protein |
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| Protein accession | NP_719026 |
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| Protein GI | 24374983 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGAGG CGAGTAGTCG CACCCTATAC AGTAATTTAG GCAGTGGATT GAGCGCTTTT
ACTCTGTCAA ATGCTTCTCG TAAAGCAGGT GGTAATGCGC GTTTAGCGAC CTATATGGGC
GTTGATGAAA CGGAGCTCAC TGGGCTGTTT GACTGGGCCA AAGGGATCGA CGTTGATAAC
GATAAGAATC AGGACTTAAC TGCCGCTAGT GGCGCAACCC CAAATTGGCG CACCGATATT
ATGGGAGATG CTTTACATTC CAAGCCCTTA GCACTGAATT TTGGTTCTGA AGCTAAACCC
GATATCCGAA TTCTTGTCGG GACTAACCAT GGTTTCCTGC ATATGTTTAA GGATAAAGGC
GACAGCGTGT CTGAAGCTTG GGGATTTATG CCCTATGAGC TACTGCCGAA TATTCGCGAT
TTGAAGGCGA ATGCACCAAC AGGGGTGCAC TCCGTTTATG GTATTGATGG CTCGCCCGTT
GCTTATACCA AAATGCAGGG AAAACGTATT GAAAAGGCAT GGGTATTTGT GGGAATGCGC
CGTGGTGGCA ATGCGTATTA CGCCCTCGAT GTGACCAGCC CCGATAACCC CAGTTTTATG
TGGAGGATTG ATGCAAGCTC ACCCGGTATG GGTGAGTTAG GGCAATCCTG GTCGACGCCT
GTGGTGACGA CAATCCCCAG TGCCACTGGC GATAAGCCAG TATTGATTTT TGGTGGCGGA
TATTCCCCTT CAACTAAAGA TGGCGCTGAG ATTGGCACTG ATGACAGCCG TGGCCGTGGC
GTATTTATTG TCGATGCGCA AACCGGCAGT TTAATCCATC AATTTGGCGG CAGCGGGGCG
AACACCCCAT TGCCCGGTAT TGCTAATAGT ATTCCGAGCA GTGTTGCTGT ATTGGACGGC
AATGGCGATG GCCTTACGGA TAGGATTTAT GCCACTGATA TACAAGGTAA TGTGTGGCGG
ATGGACATGC CTTCTGCGAA TACTTCGACT TGGTCAGGAT TTAAATTCGC TGCATTAGGG
GATAAGAGTT CGGTTGCGGG CGATCGGCGA TTTTTTTCTG GGCCAATAGT GGCGCAAACC
TTGATTTCCA ATACCTTTGA GCTGACTAAA GTCGTTAATG GAAAATCGAC CAAAGTGGTC
ACGTCACAGA ATATTCCTTA CGACGCAATT GTTATAGGCA GTGGTCATAG GGCCAAACCA
AGTGATGTGT CTCGCTCGGA TATGTTTTTT ACATTGCAAG ATAGAAACAT TGTGACCCAA
TCATTCCAAG GTAAGTCGAA TCAAAAGCCT GTGCCTAAAA CGCTGCAACT AAGTGACTTA
TATGATGTCA CGGCAGCGGC GCCAAGCGAT CAAGCCAGCG AGATAGCCTT TGGTCAAAAA
CGCGGTTGGT ACTATAACTT CTCTCGTAAA GGCGAAAAGA GCCTTTCGTC CGCGACCATA
GTCGGGGGGG AAGTATATTT CACCAGTTTT GTGCCCGGTA GTGATGGCTC GGTGAATCAA
TGCTTGAGTT CGGGTAAGGG GTATCTCTAT AAAAAGAATT TACACAGGGG CACTCGTGGT
TACAAAACGG ATTATTTATA TGCAGGCGAA CTGGTACTGG ATACGCCGCA GTTGGTGATC
CCGCCCGCCG AGCAGCCTAA GGACCCGAAT GCCAAAGTAC CAACGCCAGA TATGTTTTTG
ATTGGTATCG GTAATGCGGC GCCAGATGAA GCGACATGTG AAAGTGGTAA CCCTAAATGT
ATAGGTGGCG GGCCAACAAC GAACAAAATT TATTATTACA TCAGTCAATG A
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| Protein sequence | MQEASSRTLY SNLGSGLSAF TLSNASRKAG GNARLATYMG VDETELTGLF DWAKGIDVDN
DKNQDLTAAS GATPNWRTDI MGDALHSKPL ALNFGSEAKP DIRILVGTNH GFLHMFKDKG
DSVSEAWGFM PYELLPNIRD LKANAPTGVH SVYGIDGSPV AYTKMQGKRI EKAWVFVGMR
RGGNAYYALD VTSPDNPSFM WRIDASSPGM GELGQSWSTP VVTTIPSATG DKPVLIFGGG
YSPSTKDGAE IGTDDSRGRG VFIVDAQTGS LIHQFGGSGA NTPLPGIANS IPSSVAVLDG
NGDGLTDRIY ATDIQGNVWR MDMPSANTST WSGFKFAALG DKSSVAGDRR FFSGPIVAQT
LISNTFELTK VVNGKSTKVV TSQNIPYDAI VIGSGHRAKP SDVSRSDMFF TLQDRNIVTQ
SFQGKSNQKP VPKTLQLSDL YDVTAAAPSD QASEIAFGQK RGWYYNFSRK GEKSLSSATI
VGGEVYFTSF VPGSDGSVNQ CLSSGKGYLY KKNLHRGTRG YKTDYLYAGE LVLDTPQLVI
PPAEQPKDPN AKVPTPDMFL IGIGNAAPDE ATCESGNPKC IGGGPTTNKI YYYISQ
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