| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3472 |
|---|
| Symbol | |
|---|
| ID | 1171148 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 3617475 |
|---|
| End bp | 3619142 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637345278 |
|---|
| Product | putative ABC transporter ATP-binding protein |
|---|
| Protein accession | NP_719021 |
|---|
| Protein GI | 24374978 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCAGT TTGTTTACAG CATGTTGCGG GTGGGCAAGG TTGTTCCGCC TAAGAAGCAG
ATCCTTAAAG ACATTTCCTT AAGCTTTTTC CCCGGCGCTA AGATCGGTGT GTTAGGTCTT
AACGGTTCAG GTAAATCAAC CCTACTGCGC ATTATGGCCG GTATTGATAC TGAGATTGAG
GGTGAAGCGC GCCCTATGCC AGGGTTGAAG ATTGGTTACC TGCCACAGGA ACCTAAGCTC
GATCCGAATC AAACCGTGCG TGAAGCGATT GAAGAAGCAG TTTCTGAAGC CAAAAATGCC
CTCAAACGCT TAGACGAAGT CTATGCCGCC TATGCAGAGC CCGATGCAGA CTTCGACGCA
CTTGCCAAAG AGCAAGGCGA ACTTGAAGCA ATTATTCAGG CACAGGACGC GCACAATCTG
GATAATATCC TTGAGCGTGC AGCTAACGCA CTGCGTCTGC CTGATTGGGA TGAAAAAATC
GAAGTGCTAT CAGGTGGTGA GCGCCGCCGT GTAGCAATTT GTCGTCTGCT GCTGGAAAAA
CCAGAGATGC TGCTGCTCGA TGAACCCACC AACCACTTGG ATGCCGAATC GGTGGCGTGG
CTCGAGCACT TCCTGCAGGA ATATGCCGGC ACAGTGGTGG CAATTACCCA CGACCGTTAC
TTCCTCGACA ATGCTGCAGG CTGGATTTTA GAACTTGACC GTGGTGAGGG TATCCCATGG
GAAGGCAACT ACTCTTCATG GCTTGAGCAA AAAGATGCCC GCTTAAAGCA GGAATCAGCC
GCAGAAAGCG CCCGTCAAAA GACCATTGCG AAAGAATTAG AATGGGTTCG CCAAGGTGCG
AAAGGCCGTC AGTCTAAAGG CAAGGCCCGT ATGGCGCGCT TTGAAGAACT GAACACTAAC
GATTACCAAA AACGTAACGA AACTAACGAG CTGTTTATTC CACCAGGACC GCGTTTAGGT
GACAAGGTCA TTGAAGTTAA CAACTTAACT AAGTCCTATG GTGATCGCGT ATTGATCGAT
AACCTGTCCT TCTCTGTACC TAAAGGCGCT ATCGTCGGTA TTATCGGTGC CAACGGCGCG
GGTAAATCAA CCCTATTCCG CATGCTTTCA GGCAGCGAAC AACCCGATAG CGGCAGCATT
GAACTAGGTG AAACCGTGCA ATTGGCGTCG GTTGAACAGT TCCGTGATTC GATGAATGAC
AAAAACACCA TTTGGCAAGA AATCTCCGGT GGTCAAGACA TCATGCGCAT CAACAACATG
GAAATCCCAA GCCGCGCCTA TGTCGGCCGC TTTAACTTCC GTGGTGGTGA TCAGCAAAAG
ATTATCGGCA CATTATCAGG CGGTGAGCGT AACCGTGTTC ACTTAGCAAA ACTGTTGCAG
GCTGGCGGTA ACGTACTGCT CCTCGACGAA CCAACTAACG ACTTAGACGT TGAAACCCTG
CGCGCACTGG AGGAAGCGAT TCTCGAATTC CCTGGCTGCG CTATGGTGAT CTCGCACGAC
CGTTGGTTCC TAGACCGTAT CGCGACCCAC ATTCTAGACT ATCGCGACGA AGGTCAAGTG
AACTTCTACG AAGGTAACTA CACCGAGTAC TCGGCGTGGT TGAAGAACAC CTATGGCGCC
GATGTGGTTG AGCCGCACCG CCTAAAATAC AAACGCATGA CGAAATAG
|
|---|
| Protein sequence | MAQFVYSMLR VGKVVPPKKQ ILKDISLSFF PGAKIGVLGL NGSGKSTLLR IMAGIDTEIE
GEARPMPGLK IGYLPQEPKL DPNQTVREAI EEAVSEAKNA LKRLDEVYAA YAEPDADFDA
LAKEQGELEA IIQAQDAHNL DNILERAANA LRLPDWDEKI EVLSGGERRR VAICRLLLEK
PEMLLLDEPT NHLDAESVAW LEHFLQEYAG TVVAITHDRY FLDNAAGWIL ELDRGEGIPW
EGNYSSWLEQ KDARLKQESA AESARQKTIA KELEWVRQGA KGRQSKGKAR MARFEELNTN
DYQKRNETNE LFIPPGPRLG DKVIEVNNLT KSYGDRVLID NLSFSVPKGA IVGIIGANGA
GKSTLFRMLS GSEQPDSGSI ELGETVQLAS VEQFRDSMND KNTIWQEISG GQDIMRINNM
EIPSRAYVGR FNFRGGDQQK IIGTLSGGER NRVHLAKLLQ AGGNVLLLDE PTNDLDVETL
RALEEAILEF PGCAMVISHD RWFLDRIATH ILDYRDEGQV NFYEGNYTEY SAWLKNTYGA
DVVEPHRLKY KRMTK
|
|---|
| |