| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3456 |
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| Symbol | rumA |
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| ID | 1171132 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 3600490 |
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| End bp | 3601839 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637345262 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | NP_719005 |
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| Protein GI | 24374962 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACAAT TTTTTAAAGC AAAACCAAAT AGTTCCAAAC AGTTGTCCGC TAAGCAATCC
TTCAGCGTGC AGCAGCTCGA TCATCTCGGA GCAGGTATAG CACAACATCA GGGAAAAGTC
GTATTTATCC CCGGCGCCTT ACCCAATGAA ACCGTGCAGG CGCAGTTGAC CGAACAAAAG
AAAAACTATG CCCGAGCCAA GTTAATTAAG GTCGAGACGC CAAGCACTGA GCGGGTTTCG
CCCTTATGTC CCCATTACCA CACTTGCGGT GGCTGTGATT TACAGCATAT GTCATTAACG
GCGCAACGTG AGCATAAGTC GGCGGCTCTG GTGGATATTA TGGCAAAATT TGCTGGCGCC
GAAGGTTCTT TAGCCCCTGC ATTAAGCGGC GAAGGTTGGC ATTACCGTCG TCGTGCCCGT
CTTGCGACTT TATTTGATAA AAATACCAAG CAGTTAAGCT TAGGTTTTCG TGCATCGAGC
AGTAGCCATG TGGTGTCGAT TACTGAGTGT TTAGTCTTGG CTAAGCCTTT GTCTGATTTA
ATCGCCCCAT TTGCTAAGTT GCTGAATCAA CTCGCGGCGA AATCAAGTCT AGGTCACTTA
GAGTTGATTG CAGCCGACAA TGGCCATTTT GCGGTGATTC GGATCACTAA AAGCTTAAAT
GATAAGGATA TGGCAAAGCT TGCGCAGTTT GCCGAGCAGC ACCAAATCCA TATTTGTTTG
CAAGATAATG AAGGCGAGTT CCATGGTGTG AATGGCACGC TGTTATTGCC TGTTTACCAA
TTGCTCGATG ATAAAACTGA TGTACAGCCG GTGAGCTTAA CTTTTACTCC GGGTAACTTT
GTGCAAGTCA ACGCACAAAT TAACAAGGCG ATGGTAGCAC AGGCGTTAGA CTGGTTAGCG
CCGCAGCCGG GAGAGCGCAT TCTTGACCTC TTCTGTGGTA TGGGTAACTT CAGTTTGCCC
TTAGCCAGAA TGGGCGCCGA TGTGATTGGG GTTGAAGGGG TGCCTGAAAT GGTCAGCCAA
GCCCGTGAAA ACGCGGTGGC AAATGGCTTA AGCAATTTAA CCTTTTACCA TGGTGACTTA
AGTGCTGATT TATCCTCTGA GCCTTGGATG GGCAAGATTG ATAAGTTGCT ACTCGATCCC
GCGCGCGCAG GCGCGTATGA GAGTTTGCAG TGGCTTAAGA AGATGAAACC ACGCCAAGTG
GTGTATGTGT CCTGTAATCC GGCGAGTTTA GCCCGTGACA GTGCGGTATT ACTCGAGCGA
GGTTACAAGC TACAAAAATT AGGCTTAATC GATATGTTCC CACAGACACA CCATATCGAA
GCGATGGCAT TGTTTGAGCT GGCAAAATAA
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| Protein sequence | MAQFFKAKPN SSKQLSAKQS FSVQQLDHLG AGIAQHQGKV VFIPGALPNE TVQAQLTEQK
KNYARAKLIK VETPSTERVS PLCPHYHTCG GCDLQHMSLT AQREHKSAAL VDIMAKFAGA
EGSLAPALSG EGWHYRRRAR LATLFDKNTK QLSLGFRASS SSHVVSITEC LVLAKPLSDL
IAPFAKLLNQ LAAKSSLGHL ELIAADNGHF AVIRITKSLN DKDMAKLAQF AEQHQIHICL
QDNEGEFHGV NGTLLLPVYQ LLDDKTDVQP VSLTFTPGNF VQVNAQINKA MVAQALDWLA
PQPGERILDL FCGMGNFSLP LARMGADVIG VEGVPEMVSQ ARENAVANGL SNLTFYHGDL
SADLSSEPWM GKIDKLLLDP ARAGAYESLQ WLKKMKPRQV VYVSCNPASL ARDSAVLLER
GYKLQKLGLI DMFPQTHHIE AMALFELAK
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