| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3438 |
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| Symbol | ispD |
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| ID | 1171113 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 3582325 |
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| End bp | 3583074 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637345247 |
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| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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| Protein accession | NP_718991 |
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| Protein GI | 24374948 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGATATCG TCTTAGAAGC CACGTCGCAA ACCGAAACAC AAGTTGCTGT TCAACTTGAA
CCTTTATCGT CCAATGTGGT GGCTATTGTT CCCGCCGCAG GGATTGGTAG TCGCATGGGG
GCTGGTAAAC CCAAGCAATA TTTACCTTTA TTGGGCCAAA GCATTTTGGC GCATACGTTA
GACAAATTAT TGTCCCATCC GCTAATTAGC CAAGTGATTG TTGCGCTGCA TCCAGAGGAT
GCTGACTTTT ATGCATTACC TCAGGCCAAG CATCCTAAAC TCAAAACTGT GATTGGCGGT
TCTGAGCGCG CCAACTCAGT ACTCGCGGCC CTTGATAAGG CGCCTGACAA TAGCTGGGCT
TTAGTTCACG ATGCGGCAAG ACCCTGCTTG ATGGCGAGTG ATATTGATAA ATTGCTGACA
TCGAGGGTGC AATTTCCCCA AGGGGCGATT TTGGCCATGC CAGTGCGAGA TACTATGAAG
CGCGCCAATA GCTTAGGTGA AATCAACTCG ACCGTGTGCC GCGATAATCT CTGGCATGCA
TTGACGCCGC AATTGTTTCC AACGTCACTA TTGCGATTAC ATCTACAGGG CGCACTAAAC
GCCGGCGCTG TGGTAACCGA TGAAGCCTCG GCAATGGAAT GGGCTGGCAT TTCTCCCGGA
TTGGTTGCTG GACGGGCGGA TAATATCAAA GTCACTCATC CCGATGATTT AGAATTGGCA
GAGCTTTTTT TAATGCGCGC TAAGGCTTGA
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| Protein sequence | MDIVLEATSQ TETQVAVQLE PLSSNVVAIV PAAGIGSRMG AGKPKQYLPL LGQSILAHTL
DKLLSHPLIS QVIVALHPED ADFYALPQAK HPKLKTVIGG SERANSVLAA LDKAPDNSWA
LVHDAARPCL MASDIDKLLT SRVQFPQGAI LAMPVRDTMK RANSLGEINS TVCRDNLWHA
LTPQLFPTSL LRLHLQGALN AGAVVTDEAS AMEWAGISPG LVAGRADNIK VTHPDDLELA
ELFLMRAKA
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